SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1761

Length: 885 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1761

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7684	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref\|NP_001078546.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj\|BAB10005.1\| WD-repeat protein-like [Arabidopsis thaliana] gb\|AAK96726.1\| WD-repeat protein-like [Arab	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	wd repeat-containing protein 26-like	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLQ1

Fln msg: Separated hits, possible frame ERROR between 324 and 384, Distance to subject end: 339 aas, your sequence is shorter than subject: 244 - 584

Fln protein: MGAIEDEEPPLKRLKVSSPGLRRGLEEEAPSLSVGSVSILMAKSLSLEEGETVGSVxxxxxxxxxxxxxxxxxxxxxKKLVALLEVSQGILLQSSNVALFRKQILDGRWDESVLTLRGIDQVEVEGNTLKAASFLILQQKFFELLDKGNIPEAMKTLRLEISPLQLNTKRVHELASCIVFPSRCEELGYSKQGNPKSSQRMKVLQEIQQLLPPSIMIPEKRLERLVEQALRVQREACIFTTPWI

Protein Length: 245

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTTTAGGTGGTTTCCGTCTTTTGTTCATTTTAATTTTCACCAGAAGGATTAATCACCTGCGAGGTGCATTTTACCCTCTTTTGATTAGAAATATTTATGGGCTAAATTGTGGCGTGTGAACGTTTC_-_ATGGGAGCCATTGAGGATGAAGAACCACCCCTGAAGCGTTTAAAGGTGTCCTCACCCGGCTTGAGAAGAGGTTTGGAGGAGGAGGCCCCTTCATTGTCTGTGGGGTCAGTGAGCATCTTAATGGCCAAATCATTGTCTTTGGAGGAGGGTGAGACAGTAGGTTCCGTCGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAAAAAGCTGGTCGCGCTTTTGGAAGTGAGTCAAGGAATACTTCTCCAGTCTTCAAATGTAGCTTTATTTAGAAAACAGATACTCGATGGAAGGTGGGATGAAAGTGTTCTTACACTGCGGGGTATTGATCAAGTGGAGGTGGAAGGAAACACACTGAAGGCTGCATCCTTTCTGATCTTGCAGCAGAAGTTCTTTGAACTACTGGACAAAGGTAACATCCCTGAAGCTATGAAAACACTTCGATTAGAAATTTCTCCACTGCAATTGAACACAAAAAGAGTACATGAACTTGCAAGCTGCATTGTGTTTCCTTCACGGTGCGAGGAGCTTGGATATTCAAAGCAGGGGAATCCAAAGTCCAGTCAACGGATGAAAGTTTTGCAAGAAATTCAACAATTATTACCACCTTCTATAATGATCCCAGAAAAGAGGCTAGAACGTCTAGTGGAGCAGGCCCTTCGTGTGCAGCGAGAAGCATGTATTTTCACAACTCCTTGGATCC

Fln Alignment:

Contig1761___MGAIEDEEPPLKRLKVSSPGLRRGLEEEAPSLSVGSVSILMAKSLSL-EEGETVGSVGxxxxxxxxxxxxxxxxxxxxKKLVALLEVSQGILLQSSNVALFRKQILDGRWDESVLTLRGIDQVEVEGNTLKAASFLILQQKFFELLDKGNIPEAMKTLRLEISPLQLNTKRVHELASCIVFPSRCEELGYSKQGNPKSSQRMKVLQEIQQLLPPSIMIPEKRLERLVEQALRVQREACIF
B8LLQ1_______________MGAIEDEEPPLKRLKLSSPGLRRGLEEEAPALSVGSVSILMAKSLSLEEEGETVGSKGxxxxxxxxxxxxxxxxxxxxQKAGALLEEESGILVQSPTVASFRKQILDGKWDESVVTLQDIDQVEVEGNTLKAASFLILQQKFFEQLDKGNISEAMKTLRLEISPLQLNTKRVHELASCIVFPSRCEELGYPKQGNPNANQRMKVLREIQQLLPPSIMIPEKRLEHLVEQALNVQREACIF

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
487		20		80	0.999996
489			80	20	0.999996
490		20	80		0.999996
491	80		20		0.999996
495	80	20			0.999996
496	80	20			0.999996
497			80	20	0.999996
501			20	80	0.999996
504			20	80	0.999996
505	80			20	0.999996
510		20	80		0.999996
511	20	80			0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain