SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1737

Length: 1116 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1737

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7687	24/26

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02298, Cu_bind_like, Plastocyanin-like domain	-	-	3.0e-25	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	protein	-	-	1.67936e-38	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	anchored to membrane	GO:0031225	Cellular Component	1.67936e-38	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.67936e-38	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastocyanin-like	IPR003245	-	0.0	-
Sma3	Cupredoxin	IPR008972	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT2

Fln msg: your sequence is longer than subject: 294 - 163

Fln protein: MALVWASWTLCFVLAFFHSAMAREFVVGGRKGWVVPSGGEPQTYNHWAGRNRFMVGDTLLFKYNPAEDSVLQVTAHQYDACNTSSPIASFKGGNTVFNLSRHGPLHFITGNRSNCQKGEKLTVVVLAPRNRSHGAPAHAPTAVSPGPSVVAASPSAPAPAPAPTTKVPSSSPSPAPVVSAPSPSPVPAARPSISVVFSSSPCRRFSSVVFSSLVSSVSVPVNGNSVTVNSDSVGFAKYAHRLSTSAECISSNSSHCAEPCDAASICSQNTHYLLGTSRYIPPCYVSHRIYIVL*

Protein Length: 295

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATCAGCGCAATTTTCTTTCTTTCTCTCAGGTGCGTTGCTATTGGACGCG_-_ATGGCGCTGGTTTGGGCTTCTTGGACACTCTGTTTTGTGTTGGCATTCTTCCACAGCGCCATGGCTCGTGAGTTCGTAGTGGGAGGCAGAAAGGGATGGGTCGTCCCGTCGGGAGGCGAACCCCAGACGTACAACCATTGGGCTGGCAGGAATCGATTCATGGTCGGCGATACGCTATTGTTCAAGTACAATCCCGCCGAGGACTCCGTTCTGCAAGTTACAGCGCACCAATACGACGCCTGCAACACGTCGAGCCCAATTGCGTCTTTCAAAGGCGGGAACACCGTCTTCAATTTATCTCGCCACGGCCCCCTTCACTTCATCACCGGAAACCGGAGCAACTGCCAGAAGGGCGAGAAGCTTACGGTCGTGGTTCTGGCTCCACGAAACCGTAGTCACGGCGCACCCGCACACGCACCGACAGCAGTCTCTCCAGGGCCCTCGGTCGTTGCCGCTTCTCCTTCCGCTCCTGCTCCTGCTCCCGCTCCGACTACCAAGGTCCCTTCTTCCTCTCCGTCGCCGGCTCCTGTCGTCAGCGCCCCATCTCCGTCGCCGGTTCCTGCCGCGCGACCCTCCATCTCCGTCGTCTTCTCCAGCTCCCCTTGCCGCCGTTTCTCCTCCGTTGTCTTCTCCAGCCTTGTCTCCTCCGTCTCCGTCCCCGTTAACGGCAACTCCGTCACCGTCAACAGCGACTCCGTTGGCTTCGCAAAATACGCCCACCGCCTCTCCACCTCCGCCGAGTGCATCTCCTCCAACTCTAGTCACTGCGCTGAACCTTGTGATGCCGCTTCTATTTGCTCTCAAAATACTCACTATTTATTAGGTACAAGCCGGTATATACCTCCGTGTTATGTGTCTCACCGCATTTATATTGTTTTGTAG___GTAATATTTATTTTTGTAATTAAGTAGAGCATCTATGGTCATCTTTTCTCATACTTGACACACGGATGGCTTCATCTCTGTGTGATTGGTTTCGTCGTCTTCTTTCTGCTCTCATCGTCATCGTCAAATCAATGGAAGAAGCAATCAGTCAGCCGAAAA

Fln Alignment:

Contig1737___CFVLAFFHSAM-AREFVVGGRKGWVVPSGGEPQTYNHWAGRNRFMVGDTLLFKYNPAEDSVLQVTAHQYDACNTSSPIASFKGGNTVFNLSRHGPLHFITGNRSNCQKGEKLTVVVLAPR
A9NKT2_______________CILFAFIQSGSHASEFRVGGKNGWVVPNNTNTESYDQWAGRNRFQVGDSLVFVYNPSEDSVLQVSQEDYKSCSTSDPITSFKDGKTVFKLSQTGPVYFISGASGHCQKSQKLHVIVLSIR

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
240	20		80		0.995493
345			16	83	0.994512
346	16			83	0.994512
348	83	16			0.994512
349	80			20	0.995493
350	80			20	0.995493
354			75	25	0.996473
356			75	25	0.996473
357	75	25			0.996473
360	75			25	0.996473
362	25	75			0.996473
394	75		25		0.996473
637		50		50	1.0
640			50	50	1.0
641			50	50	1.0
642	50			50	1.0
650			66	33	1.0
655		33	50	16	1.0
658	16		33	16	1.0
660	16			50	1.0
664		66	33		1.0
665		66	33		1.0
666	66	33			1.0
668		66	33		1.0
672	33	66			1.0
673		33	66		1.0
676	16		83		0.994512
679			20	80	0.999996
682			20	80	0.999996
683		80		20	0.999996
684		80	20		0.999996
686		20	80		0.999996
689		80		20	0.999996
690		80	20		0.999996
691		81	18		0.999994
696		18	81		0.999994
697	27	72			1.0
699			72	18	0.999994
701	9	72		18	0.999994
710			21	78	1.0
711		71		21	1.0
715			14	78	0.999974
716	14		78		0.999974
717	7	14		78	0.999974
721		78	14	7	0.999974
722			21	78	1.0
724		85		14	0.999981
725	78		14	7	0.999974
726			85	14	0.999981
730	7	14		78	0.999974
731	14	7	78		0.999974
1023	10	90			0.90298
1024	90	10			0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
38	50	TTTC TTTC TTTC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain