SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1725

Length: 782 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1725

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1543	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	putative ATP(GTP)-binding protein [Oryza sativa Japonica Group]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	atp-binding family protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family, ATP binding	IPR004130	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
285			75	12	0.975346
379	80			20	0.995493
380	80	20			0.995493
381	80		20		0.995493
384	20		80		0.995493
387		80		20	0.995493
388		80	20		0.995493
389	80		20		0.995493
391			80	20	0.995493
394	20			80	0.995493
396			80	20	0.995493
446		87		12	0.992554
474			87	12	0.992554
511	88	11			0.923564
514		88		11	0.923564
517		11		88	0.923564
522		11		88	0.923564
523			11	88	0.923564
525		11	77		0.968132
527			88	11	0.923564
530		11	88		0.923564
531		11	88		0.923564
532	88			11	0.923564
540		11	88		0.923564
541	11			88	0.923564
543	88	11			0.923564
759	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain