SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1713

Length: 888 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1713

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2478	31/33
SustainPine v2.0	sp_v2.0_unigene63849	2/33

Source	Descriptions	Term	Type	Identity
AutoFact	WD-40 repeat protein [Solanum lycopersicum]	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	wd40 repeat-containing protein smu1	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	91%
Blast2go	myosin heavy chain kinase activity	GO:0016905	Molecular Function	91%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	91%
Blast2go	cytoplasm	GO:0005737	Cellular Component	91%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is shorter than subject: 255 - 314

Fln protein: VVTLAVTHFLCVDFSRDSEVVALVVTGKIKVWRIRTGQCLRRLERAHSQGVTSLSFSRDGSQLLSTSFDSTARIHGLKSGKALKEFRGHTSYVNDAIFTSDGGRVITASSDCTVKVWDVKTTDCIQTFKPPPPLKGGDVSVNSVHLFPKNSEHIVVCNKASSIYIMTLQGQVVKSFSSGKREGGDFVAACISPKGEWIYCVGEDRNIYCFSQQSGKLEHLMKAHDKDIIGVTPHPHRNLLVTYSEDSTMKIWKP*

Protein Length: 256

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCCTCTGTGTTGACTTCAGTCGAGATTCAGAGGTGGTGGCTTTGGTTGTCACTGGGAAAATTAAGGTATGGCGTATACGAACAGGTCAGTGTTTAAGGCGTCTAGAGCGTGCACATTCTCAGGGTGTTACAAGCCTTTCATTCTCTCGTGATGGAAGTCAGCTTTTAAGCACATCATTTGACAGCACTGCAAGAATACATGGGCTCAAATCTGGCAAAGCATTAAAGGAATTTCGTGGTCATACATCTTATGTAAATGATGCAATATTCACAAGTGATGGGGGTCGCGTTATTACTGCTTCTAGTGATTGTACTGTAAAGGTTTGGGATGTGAAGACAACTGATTGTATTCAAACATTTAAACCTCCACCTCCTCTCAAGGGAGGTGATGTATCAGTGAATTCTGTCCACCTTTTTCCAAAGAACTCAGAGCACATTGTAGTCTGCAACAAGGCATCATCAATCTATATCATGACACTCCAAGGGCAGGTTGTCAAAAGTTTCTCATCTGGTAAAAGGGAAGGAGGAGATTTTGTTGCTGCATGCATTTCTCCAAAAGGAGAGTGGATCTATTGCGTTGGGGAAGACAGAAATATCTACTGCTTCAGTCAACAGTCTGGGAAGCTTGAACATCTTATGAAGGCACATGACAAGGACATAATTGGTGTAACACCTCATCCACATAGGAATTTGTTGGTAACATATAGTGAAGATAGCACAATGAAGATATGGAAACCCTAA___TATGGATTTTATACTGCTATTGGATTTGTATAGAAATAATAATTTTTTGAATTTTGATGGTAGCGTATGGTTGAAGGAAAACTTGGATATATCATGTACACATTTTTCTCCATAAAGGAATG

Fln Alignment:

Contig1713___VDFSRDSEVVALVVTGK-IKVWRIRTGQCLRRLERAHSQGVTSLSFSRDGSQLLSTSFDSTARIHGLKSGKALKEFRGHTSYVNDAIFTSDGGRVITASSDCTVKVWDVKTTDCIQTFKPPPPLKGGDVSVNSVHLFPKNSEHIV---------VCNKASSIYIMTL---------------QGQVVK-----------SFSSGK----REGGDFVAACIS-----PKGEWIYCVGEDRNIYCFSQQSGKLEHLMKAHDKDIIGVTPHPHRNLLVT--YSEDSTMKIW
A9NPC1_______________VKFSADGKLLGSASADKSVRIWSAGDGSAKRELQ-GHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKV------LPAHSDPVTAVH-FNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
113		33	66		0.997452
121	33			66	0.997452
122		33		66	0.997452
123		33		66	0.997452
124	66			33	0.997452
125	66			33	0.997452
131		66	33		0.997452
134		33	66		0.997452
151	75		25		0.996473
152			75	25	0.996473
154	25		75		0.996473
155		25		75	0.996473
156		25	75		0.996473
159	75		25		0.996473
160		75	25		0.996473
161	75	25			0.996473
162	75			25	0.996473
164		75		25	0.996473
166	25			75	0.996473
167		25		75	0.996473
183		20	80		0.995493
185	80			20	0.995493
186	80	20			0.995493
189		80	20		0.995493
191		20	80		0.995493
195			16	83	0.994512
196			16	83	0.994512
197	66	16	16		0.988813
198	83			16	0.994512
201	83			16	0.994512
206	80		20		0.999996
208			20	80	0.999996
217		80		20	0.999996
220		80	20		0.999996
221	80	20			0.999996
222	80			20	0.999996
225	80			20	0.999996
226		20		80	0.999996
231		20	80		0.999996
232	20		80		0.999996
559		12	87		0.992554
570			20	80	0.999996
571			80	20	0.999996
573	80		20		0.999996
576	20	80			0.999996
577	80	20			0.999996
578		20		80	0.999996
581		80	20		0.999996
582			20	80	0.999996
584		80		20	0.999996
585	80		20		0.999996
586	80			20	0.999996
587	80	20			0.999996
592	6	12	81		0.999943

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain