SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1698

Length: 399 nt

UniGene Fasta

>uagpf_v2_unigene1698
CGTCGTGACCTTGGCTGTCACTCATTTCTCTTGGTGGCATCGTCAGCTTACTCTCTGCAGTTGATCCAGATAAACCACCAAAGACAATTTCTGGTCACATGAAAAGTATAAATGCAATTGCATTATATCTTCAAAGTGGACAAAGTGAGGTTTGCTCAAGCAGCTATGATGGTGTAATTGTTAGATGGATTCTTGGAGTTGGTTATGCTGGTCGGGTAGAGAGAAAAGATAGTACTCAAATCAAATGCCTGGCAACAATTGAAGGAGAGCTGGTAACTTGTGGTTTTGATAATAAGGTGAGAAGGGTACCTCTCCTATCAGAGCAACATAAAGAGTCAGAACCAATTGACATTGGAGCACAACCAAAGGATCTAGATGTTGCAGTTGGTTGCCCTGAGC

Ace file of the UniGene uagpf_v2_unigene1698

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10248	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj\|BAB02018.1\| WD40-repeat protein [Arabidopsis thaliana] gb\|AAL32514.1\| WD40-repeat protein [Arabidopsis thaliana] gb\|AAM47943.1\| WD40-repeat protein [Arabidopsis thaliana] gb\|AEE76041.1\|	-	-	67%
FL-Next	tr=Os01g0125800 protein; Oryza sativa subsp. japonica (Rice).	-	-	50%
Blast2go	66 kda stress protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	82%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9AWU6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 187 aas, your sequence is shorter than subject: 132 - 610

Fln protein: S*PWLSLISLGGIVSLLSAVDPDKPPKTISGHMKSINAIALYLQSGQSEVCSSSYDGVIVRWILGVGYAGRVERKDSTQIKCLATIEGELVTCGFDNKVRRVPLLSEQHKESEPIDIGAQPKDLDVAVGCPE

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTCTTGGTGGCATCGTCAGCTTACTCTCTGCAGTTGATCCAGATAAACCACCAAAGACAATTTCTGGTCACATGAAAAGTATAAATGCAATTGCATTATATCTTCAAAGTGGACAAAGTGAGGTTTGCTCAAGCAGCTATGATGGTGTAATTGTTAGATGGATTCTTGGAGTTGGTTATGCTGGTCGGGTAGAGAGAAAAGATAGTACTCAAATCAAATGCCTGGCAACAATTGAAGGAGAGCTGGTAACTTGTGGTTTTGATAATAAGGTGAGAAGGGTACCTCTCCTATCAGAGCAACATAAAGAGTCAGAACCAATTGACATTGGAGCACAACCAAAGGATCTAGATGTTGCAGTTGGTTGCCCTGAGC

Fln Alignment:

Contig1698___AVDPDKPPKTISGHMKSINAIALYLQSGQSEVCSSSYDGVIVRWILGVGYAGRVERKDSTQIKCLATIEGELVTCGFDNKVRRVPLLSEQHKESEPIDIGAQPKDLDVAVGCPE
Q9AWU6_______________ASNPDKEPVTFAGHLKTVSSLAFFPQSNPKTILSTSYDGVIMRWIKGVGYGGRLMRKNNTQIKCFTVAEEELVTSGYDNKVFRIPLNGDQCGDAESVDVGGQPNALNLAIQKPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain