SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1677

Length: 2606 nt

UniGene Fasta

>uagpf_v2_unigene1677
CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCTATTTTATTGTACAGTATCTCACATCTGGTTTTGGTTTGCATTTCTGTGCAGTGCGTCCGAGAGCCATCCTAATATTCTCGGAGTAACATCTGTGCACTTAGGATTTAGAATTAGATCGCTAGGAGGAGGTCTGTAAGGCTGTCAGATTAGATTCCTTACAGAACTAACATGCCCGTTCTCCGCATAAATAGCTCAGGAAATGCATGCAGAGAGGGCTTGAATAGCCAGACGAGCTTTCCAGCGAAGTAGTGCTGTTTTCTTGACACCCATTTCGCAAAATGTAAGTTTGGGGTTCCAAAGGGTTTTTATCATATACCGAAGCTTACATTTCTGCAGAAAGCTTGTTCGAAGAAGAAAACAACTGCCACGGGGGAATACAGGAGATTGTTGCTGCTTGTGTTTGTTTGGGTTTTCTTCTTCAGAGAGGCATACTGTGGAGACCCATTTGTGTTTTATGACTGGAATGTTTCTTACATTGAAGCTGCCCCTCTGGGTGTGAAGCAGCAGGTGATTGCAATTAATGGGCAGTTTCCTGGACCCTTGGTGAACTTGACAACCAATTGGAATGCTGTAGTGAATGTTTTGAACAATTTGGATGAGCCATTTCTGATCACCTGGAATGGTTTGCAAAATCGCAGAAATTCTTGGCAAGATGGTGTATCTGGGACCAATTGTCCTATTCCGGCAGGATGGAACTGGACCTATAATTTTCAGGCCAAGGATCAGATTGGTAGCTTCTTTTACTTTCCTTCCCTTCACTTTCAGAGGGCAGCAGGAGGGTTTGGTGGAGTTATTGTGAACAATCGTCCAGTGATTCCTGTACCCTTTGGAACTCCCGATGGAGATTTCACAATCTTTATTGGTGATTGGTATACAAGGAGTCATACAGATCTGCGAGCAGCCCTTGATGCTGGCAAGGACCTTGGACTGCCTGATGGAGTGCTTTTTAATGGGAAAGGGCCCTACCGTTACAATAATTCAGTCCCCGCTGGTATTGATTACGAGACATTCAATGTTCAGCCTGGGAAAACCTATCGCATGAGGGTACACAATATTGGGATTTCAACTACTTTGAACTTTAGAATCCAGAATCATAATTTGCTGCTTGCGGAGACAGAAGGGTCCTATACATCACAACAAAATTACACGAACTTGGATATTCATGTTGGTCAGTCTTACTCATTCCTGGTGACGATGGACCAGAATGCAAGCAGTGATTACTACATGGTGGCAAGTGCTCGCTTTGTTAATACAACTATTTGGTCTAATGTCACGGGTGTGGCAATATTGCATTATTCCAATTCTAAAGGTAAGGCAAATGGGCCTCTTCCAGATGGTCCGGATGATTATTATGACAAGTACTTCTCTATGAACCAGGCAAAATCTATCAGGTGGAATGTATCTGCCGGGGCTGCTAGGCCTAATCCACAGGGGTCTTTCAAATATGGATCTATCAATGTCACTCAGGTCTTTGTGTTGAAAAACAAGCCACCAGAATTGGTCAATGGGAAACGACGTTGCACTTTGAATGGGATCTCCTACCAAGCTCCTGCAACTCCACTCAAGCTTGCTGATCGTTTTAATCTAAATGGAGTCTTCAAACTTGATTTCCCAGACAGACCAATGAACAGGACACCAAAGCTTGATACGTCAATAATTAACGGCACCTATAGAGGATTCATGGAAATCATTCTACAGAATAATGATACAACTGTGCAAAGTTATCACATGGATGGCTATGCCTTTTTTGTTGTCGGGATGGACTATGGAGATTGGACAGAAGACAGCAGAGGAACTTACAACAAATGGGATGGAGTTGCTCGTTCCACAGCACAGGTTTTCCCCAATGCCTGGACAGCAATTCTAGTATCTCTAGATAATGTTGGCATGTGGAATCTCCGAGCCGAAAATCTAGATACCTGGTATCTGGGTCAGGAAACATATGTAAGGGTTGTGAATCCAGAGATAAACAACAAAACTGAGTTGCCTCTGCCTAGCAATGCTCTTTACTGTGGTGCCCTCTCACGCATGCAGAAGCCACAGTCCCATACAAATGATGAAAAAGCGTCGGCGTCATCTATCAATGCTGGCATGGTTACATTGCTAGGTGGCTTTCTGATTTCCTGGGGAATACTTTTCAGCTAAACTATCCAGCCCATAGAAATCCCTGACCACTTGCAAAGACAGTCGGGGATTTCTTGTGAAGATAGGTCAGTGATCTTAAAATTTCAGATGTGTAGCAGAGACTACTATGATTCATTTAAAGAGGAAAGGCAAGGTGAAGAAATTGCAGTTGAATCCATCTTGGGACTTGTGAGGACCTGTTGACGTACCTTTTTTGGCATGGCGAATAGGCCATGGTTGGTTGTGACTTAAATTTATTCATGCATTCATGTGTGATGCCATCGTGCTCCGGATACTGGGATTTAGATTTGAGTTGTATGCATAATTGTAGCTATATGGCCTACCAAAGTCTTAGGCATTTGTTGTATTTATTCACGACTTTGTAAGGATTTCTTTTCTGCCATTGATTTTCTACTAATCAGAGCATTATTTTAA

Ace file of the UniGene uagpf_v2_unigene1677

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3065	126/141
SustainPine v2.0	sp_v2.0_unigene61125	11/141

Source	Descriptions	Term	Type	Identity
AutoFact	Monocopper oxidase-like protein SKU5 [Arabidopsis thaliana] ref\|NP_001190704.1\| Monocopper oxidase-like protein SKU5 [Arabidopsis thaliana] sp\|Q9SU40.1\|SKU5_ARATH RecName: Full=Monocopper oxidase-like protein SKU5; AltName: Full=Skewed roots; Flags: Precu	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	monocopper oxidase-like protein sku5	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	L-ascorbate oxidase.	EC:1.10.3.3	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	cell tip growth	GO:0009932	Biological Process	84%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	copper ion binding	GO:0005507	Molecular Function	84%
Blast2go	L-ascorbate oxidase activity	GO:0008447	Molecular Function	84%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	84%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	84%
Blast2go	apoplast	GO:0048046	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRE4

Fln msg: W1: There is no M at the beginning, your sequence is longer than subject: 632 - 591

Fln protein: CCFLDTHFAKCKFGVPKGFYHIPKLTFLQKACSKKKTTATGEYRRLLLLVFVWVFFFREAYCGDPFVFYDWNVSYIEAAPLGVKQQVIAINGQFPGPLVNLTTNWNAVVNVLNNLDEPFLITWNGLQNRRNSWQDGVSGTNCPIPAGWNWTYNFQAKDQIGSFFYFPSLHFQRAAGGFGGVIVNNRPVIPVPFGTPDGDFTIFIGDWYTRSHTDLRAALDAGKDLGLPDGVLFNGKGPYRYNNSVPAGIDYETFNVQPGKTYRMRVHNIGISTTLNFRIQNHNLLLAETEGSYTSQQNYTNLDIHVGQSYSFLVTMDQNASSDYYMVASARFVNTTIWSNVTGVAILHYSNSKGKANGPLPDGPDDYYDKYFSMNQAKSIRWNVSAGAARPNPQGSFKYGSINVTQVFVLKNKPPELVNGKRRCTLNGISYQAPATPLKLADRFNLNGVFKLDFPDRPMNRTPKLDTSIINGTYRGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTEDSRGTYNKWDGVARSTAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELPLPSNALYCGALSRMQKPQSHTNDEKASASSINAGMVTLLGGFLISWGILFS*

Protein Length: 633

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCTATTTTATTGTACAGTATCTCACATCTGGTTTTGGTTTGCATTTCTGTGCAGTGCGTCCGAGAGCCATCCTAATATTCTCGGAGTAACATCTGTGCACTTAGGATTTAGAATTAGATCGCTAGGAGGAGGTCTGTAAGGCTGTCAGATTAGATTCCTTACAGAACTAACATGCCCGTTCTCCGCATAAATAGCTCAGGAAATGCATGCAGAGAGGGCTTGAATAGCCAGACGAGCTTTCCAGCGAAGTAGTGCTGTTTTCTTGACACCCATTTCGCAAAATGTAAGTTTGGGGTTCCAAAGGGTTTTTATCATATACCGAAGCTTACATTTCTGCAGAAAGCTTGTTCGAAGAAGAAAACAACTGCCACGGGGGAATACAGGAGATTGTTGCTGCTTGTGTTTGTTTGGGTTTTCTTCTTCAGAGAGGCATACTGTGGAGACCCATTTGTGTTTTATGACTGGAATGTTTCTTACATTGAAGCTGCCCCTCTGGGTGTGAAGCAGCAGGTGATTGCAATTAATGGGCAGTTTCCTGGACCCTTGGTGAACTTGACAACCAATTGGAATGCTGTAGTGAATGTTTTGAACAATTTGGATGAGCCATTTCTGATCACCTGGAATGGTTTGCAAAATCGCAGAAATTCTTGGCAAGATGGTGTATCTGGGACCAATTGTCCTATTCCGGCAGGATGGAACTGGACCTATAATTTTCAGGCCAAGGATCAGATTGGTAGCTTCTTTTACTTTCCTTCCCTTCACTTTCAGAGGGCAGCAGGAGGGTTTGGTGGAGTTATTGTGAACAATCGTCCAGTGATTCCTGTACCCTTTGGAACTCCCGATGGAGATTTCACAATCTTTATTGGTGATTGGTATACAAGGAGTCATACAGATCTGCGAGCAGCCCTTGATGCTGGCAAGGACCTTGGACTGCCTGATGGAGTGCTTTTTAATGGGAAAGGGCCCTACCGTTACAATAATTCAGTCCCCGCTGGTATTGATTACGAGACATTCAATGTTCAGCCTGGGAAAACCTATCGCATGAGGGTACACAATATTGGGATTTCAACTACTTTGAACTTTAGAATCCAGAATCATAATTTGCTGCTTGCGGAGACAGAAGGGTCCTATACATCACAACAAAATTACACGAACTTGGATATTCATGTTGGTCAGTCTTACTCATTCCTGGTGACGATGGACCAGAATGCAAGCAGTGATTACTACATGGTGGCAAGTGCTCGCTTTGTTAATACAACTATTTGGTCTAATGTCACGGGTGTGGCAATATTGCATTATTCCAATTCTAAAGGTAAGGCAAATGGGCCTCTTCCAGATGGTCCGGATGATTATTATGACAAGTACTTCTCTATGAACCAGGCAAAATCTATCAGGTGGAATGTATCTGCCGGGGCTGCTAGGCCTAATCCACAGGGGTCTTTCAAATATGGATCTATCAATGTCACTCAGGTCTTTGTGTTGAAAAACAAGCCACCAGAATTGGTCAATGGGAAACGACGTTGCACTTTGAATGGGATCTCCTACCAAGCTCCTGCAACTCCACTCAAGCTTGCTGATCGTTTTAATCTAAATGGAGTCTTCAAACTTGATTTCCCAGACAGACCAATGAACAGGACACCAAAGCTTGATACGTCAATAATTAACGGCACCTATAGAGGATTCATGGAAATCATTCTACAGAATAATGATACAACTGTGCAAAGTTATCACATGGATGGCTATGCCTTTTTTGTTGTCGGGATGGACTATGGAGATTGGACAGAAGACAGCAGAGGAACTTACAACAAATGGGATGGAGTTGCTCGTTCCACAGCACAGGTTTTCCCCAATGCCTGGACAGCAATTCTAGTATCTCTAGATAATGTTGGCATGTGGAATCTCCGAGCCGAAAATCTAGATACCTGGTATCTGGGTCAGGAAACATATGTAAGGGTTGTGAATCCAGAGATAAACAACAAAACTGAGTTGCCTCTGCCTAGCAATGCTCTTTACTGTGGTGCCCTCTCACGCATGCAGAAGCCACAGTCCCATACAAATGATGAAAAAGCGTCGGCGTCATCTATCAATGCTGGCATGGTTACATTGCTAGGTGGCTTTCTGATTTCCTGGGGAATACTTTTCAGCTAA___ACTATCCAGCCCATAGAAATCCCTGACCACTTGCAAAGACAGTCGGGGATTTCTTGTGAAGATAGGTCAGTGATCTTAAAATTTCAGATGTGTAGCAGAGACTACTATGATTCATTTAAAGAGGAAAGGCAAGGTGAAGAAATTGCAGTTGAATCCATCTTGGGACTTGTGAGGACCTGTTGACGTACCTTTTTTGGCATGGCGAATAGGCCATGGTTGGTTGTGACTTAAATTTATTCATGCATTCATGTGTGATGCCATCGTGCTCCGGATACTGGGATTTAGATTTGAGTTGTATGCATAATTGTAGCTATATGGCCTACCAAAGTCTTAGGCATTTGTTGTATTTATTCACGACTTTGTAAGGATTTCTTTTCTGCCATTGATTTTCTACTAATCAGAGCATTATTTTAA

Fln Alignment:

Contig1677___EAYCGDPFVFYDWNVSYIEAAPLGVKQQVIAINGQFPGPXXXXXXXXXXXXXXXXXXDEPFLITWNGLQNRRNSWQDGVSGTNCPIPAGWNWTYNFQAKDQIGSFFYFPSLHFQRAAGGFGGXXXXXXXXXXXXFGTPDGDFTIFIGDWYTRSHTDLRAALDAGKDLGLPDGVLFNGKGPYRYNNSVPAGIDYETFNVQPGKTYRMRVHNIGISTTLNFRIQNHNLLLAETEGSYTSQQNYTNLDIHVGQSYSFLVTMDQNASSDYYMVASARFVNTTIWSNVTGVAILHYSNSKGKANXXXXXXXXXXXXKYFSMNQAKSIRWNVSAGAARPNPQGSFKYGSINVTQVFVLKNKPPELVNGKRRCTLNGISYQAPATPLKLADRFNLNGVFKLDFPDRPMNRTPKLDTSIINGTYRGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTEDSRGTYNKWDGVARSTAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELPLPSNALYCGALSRMQKPQSHTNDEKASASSINAGMVTLLGGFLISWGILF
C0PRE4_______________EAYCGDPFVFYDWNVSYIEAAPLGVKQQVIAINGQFPGPLVNLTTNWNAAVNVMNNLDEPLLITWNGLQNRRNSWQDGVSGTNCPIPVGWNWTYNFQAKDQIGSFFYFPSLHFQRAAGGFGGVIVNNRAVIPVPFGTPDGDLTIFIGDWYTRSHKDLRAALDAGKDLGMPDGVLFNGKGPYRYNNSVPSGIEYETFNVQPGKTYRIRVHNVGISTSLNFRIQNHNILLVETEGSYASQQNYTNLDIHVGQSYSFLVTMDQNASSDYYMVASARFVNTTIWSNVTGVAILHYSNSKGKAKGPLPDGPDDYYDKYFSMNQARSIRWNVSAGAARPNPQGSFKYGQINVTQVFVLKNKPPELINGKRRCTLNGISYQAPATPLKLADRYNLTGVFKLDFPNAPMNRPPKLDTSIINGTYRGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTENSRGTYNKWDGVARSTAQVFPNAWTAILVSLDNVGMWNLRAENLDAWYLGQETYVRVVNPEINNKTELPLPSNALYCGALSRMQKPQSHSNNEKASGSSINAGIVTLLGGFLIFWGILF

SNPs (tot: 169)

Position	A %	C %	G %	T %	Probability
24	40	60			1.0
25	40		60		1.0
27		60		40	1.0
28	40		60		1.0
30		40	60		1.0
35	40			60	1.0
36		40	60		1.0
38	40	40			1.0
40			60	40	1.0
41	40			60	1.0
44		60	40		1.0
45	40			60	1.0
46	40	60			1.0
47	40			40	1.0
113	20	80			0.995493
115	87		12		0.992554
118		87	12		0.992554
120	87		12		0.992554
122		12		87	0.992554
123	87	12			0.992554
128		87	12		0.992554
129			87	12	0.992554
130		12	87		0.992554
132		12	87		0.992554
134	87	12			0.992554
222		87	12		0.992554
252		87		12	0.992554
273		12	87		0.992554
296		15		84	0.999986
297	84			15	0.999986
298		15	84		0.999986
299	15			84	0.999986
315		54		45	1.0
322		90	10		0.90298
325	20			10	0.999998
326	90		10		0.90298
327	90			10	0.90298
328	88	11			0.923564
330		11		88	0.923564
331			88	11	0.923564
332		11		88	0.923564
334	88			11	0.923564
335			88	11	0.923564
347	62			37	1.0
357		11		88	0.923564
358	88		11		0.923564
361	88		11		0.923564
364			11	88	0.923564
369	61			38	1.0
370	61	30	7		1.0
374		7	30	61	1.0
377	76	23			1.0
381			23	76	1.0
388		15	76	7	0.999983
389	76	7		15	0.999983
390	84	15			0.999986
420		23		76	1.0
427	23		76		1.0
481	53	38		7	1.0
657			10	90	0.90298
658			10	90	0.90298
671	90	10			0.90298
683	84			15	0.999986
684	84		15		0.999986
691	84			15	0.999986
878			15	84	0.999986
880		15		84	0.999986
884	84	15			0.999986
888		84		15	0.999986
889		84	15		0.999986
891	84	15			0.999986
895	83			16	0.999991
896		16	83		0.999991
899		16		83	0.999991
919		63		36	1.0
974		83	16		0.999991
976		16		83	0.999991
983		83	16		0.999991
990		18	81		0.999994
1029	88	11			0.923564
1030			11	88	0.923564
1033	88			11	0.923564
1034			77	22	0.999999
1035	11			88	0.923564
1038		88		11	0.923564
1039		88	11		0.923564
1044			88	11	0.923564
1045		11		88	0.923564
1047		11		88	0.923564
1049		11	88		0.923564
1091	81		18		0.999994
1096		18	81		0.999994
1097		18	81		0.999994
1099	81			18	0.999994
1100		81	18		0.999994
1101	81		18		0.999994
1103	81			18	0.999994
1104	81		18		0.999994
1208		14	85		0.999981
1209	85		14		0.999981
1211	78	21			1.0
1212			15	84	0.999986
1214		76	23		1.0
1216		15		84	0.999986
1217		15	84		0.999986
1224	84			15	0.999986
1273		76		23	1.0
1310	76			7	0.999983
1311		15	7	76	0.999983
1367			85	14	0.999981
1435	85		14		0.999981
1793			89	10	0.999919
1794			5	26	1.0
1955	83	16			0.994512
1957		83		16	0.994512
1960	80			20	0.995493
1961	80		20		0.995493
1963	80	20			0.995493
1964		20		80	0.995493
1965		80		20	0.995493
1967	80		20		0.995493
1969	80	20			0.995493
1972	80			20	0.995493
1978	20		80		0.995493
2036			25	75	0.996473
2037			75	25	0.996473
2038	75	25			0.996473
2041			25	75	0.996473
2042	25		75		0.996473
2046		50		25	0.995533
2051		75	25		0.996473
2055	75		25		0.996473
2056			75	25	0.996473
2059	75	25			0.996473
2062	25		75		0.996473
2132			80	20	0.995493
2136		80	20		0.995493
2138		20		80	0.995493
2143		80	20		0.995493
2144	80		20		0.995493
2145	80	20			0.995493
2149	25			75	0.996473
2150		25	75		0.996473
2151			75	25	0.996473
2220	85		14		0.993533
2222	85	14			0.993533
2224	85			14	0.993533
2225	85		14		0.993533
2230		85		14	0.993533
2234		85	14		0.993533
2236	85			14	0.993533
2237		85	14		0.993533
2239		14		85	0.993533
2240	14		85		0.993533
2242	75		12	12	0.975346
2243	75	12		12	0.975346
2244	87	12			0.992554
2246	87			12	0.992554
2247		87	12		0.992554
2250		12		87	0.992554
2252			87	12	0.992554
2253			87	12	0.992554
2256	87	12			0.992554
2258			12	87	0.992554
2261	12			87	0.992554
2262		12		87	0.992554
2263			87	12	0.992554
2264		12		87	0.992554
2265	12		87		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain