SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1670

Length: 840 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1670

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1684	27/28

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Os05g0160800 protein; Oryza sativa subsp. japonica (Rice).	-	-	81%
Blast2go	dna polymerase epsilon subunit 2-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	87%
Blast2go	Pyrimidine metabolism	00240	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	DNA-dependent DNA replication	GO:0006261	Biological Process	87%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	87%
Blast2go	DNA binding	GO:0003677	Molecular Function	87%
Blast2go	epsilon DNA polymerase complex	GO:0008622	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	DNA polymerase alpha/epsilon, subunit B	IPR007185	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	DNA polymerase epsilon, subunit B	IPR016266	-	-

Full-Lengther Next Prediction

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
49		66		33	0.997452
51		33		66	0.997452
52	33	66			0.997452
54	33			66	0.997452
59	33			66	0.997452
64	33	66			0.997452
65	33			66	0.997452
66	33		66		0.997452
67			33	66	0.997452
69	66			33	0.997452
70	33	66			0.997452
71	33			66	0.997452
73	66	33			0.997452
76	66		33		0.997452
77			66	33	0.997452
144		66	33		1.0
239		10	90		0.90298
240	90			10	0.90298
241	90			10	0.90298
244		10	90		0.90298
245	90			10	0.90298
249		10	90		0.90298
250	10		90		0.90298
406		16		83	0.994512
410		83	16		0.994512
413	16			83	0.994512
414		16		83	0.994512
416		83		16	0.994512
420	83			16	0.994512
422		16	83		0.994512
466	83		16		0.994512
469	71	14		14	0.984337
471	85			14	0.993533
472		28	71		1.0
473		14	85		0.993533
474	71			28	1.0
475	71		14	14	0.984337
476	85		14		0.993533
477		85	14		0.993533
478	71	14			0.984337
479	71	14		14	0.984337
480	71		14	14	0.984337
482		14	85		0.993533
484			85	14	0.993533
486	14	85			0.993533
488			16	83	0.994512
490		16		83	0.994512
491	16		83		0.994512
492	83	16			0.994512
493	83			16	0.994512
524		83	16		0.999991
525	75		25		1.0
526		16		75	0.99999
529			25	66	1.0
530			16	83	0.999991
532	33	66			1.0
533		83		16	0.999991
536		16		83	0.999991
539	8	66	25		1.0
542		75	25		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain