SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1624

Length: 544 nt

UniGene Fasta

>uagpf_v2_unigene1624
CGTCGTGACCTTGGCTGTCACTCAGGTGTTGCTTGGCTTCTCCTAGCACGATTTTCGGCATCCCGTAAACCGAACTTAACGCATATCAGTTTCTCCTTGCGGTCACAGTTTTGACACTCACAGACAGCATCCCATTAGACAAAGCCAGCCTGAAAAAAACGGGTAATAGGTAGAAATTTAAAGCAATGAAAAAAAGAAATATGAAGTTGATGGGACATGACCATACATCGAGAATGAAGGATGATGACGAAGCTCAACAATTAGCTTCGGACAAAGATAGTGAAGATGCTAATTCAGAAGAAGAGAATAGAAATAACCTTTCAGATGAAGAAAATCAAGATTTTGATTCGGAAGAAGAGGAGTTACAAGAGCATCTTGCAGACATTCCGTTTGAAGAGCTTCAGAAAGTGCGCTCTGATGGTCGAGAATCAACCTTTTCTAAATTCAAGCATGATGCCAAACCCTCAAGAGCTAACAAAAACAGACCTATGGAAATGAGCAGCAAGAAGCCTGTTGGAAGGCTTAGGGAAGTTGTTCAAGGTCC

Ace file of the UniGene uagpf_v2_unigene1624

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2820	11/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF947 domain containing protein	-	-	5.0e-34	40%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	50%
Blast2go	uncharacterized protein	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	0.0	77%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF947	IPR009292	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9TCW0

Fln msg: Distance to subject end: 175 aas, your sequence is shorter than subject: 119 - 286

Fln protein: MKKRNMKLMGHDHTSRMKDDDEAQQLASDKDSEDANSEEENRNNLSDEENQDFDSEEEELQEHLADIPFEELQKVRSDGRESTFSKFKHDAKPSRANKNRPMEMSSKKPVGRLREVVQG

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGTTGCTTGGCTTCTCCTAGCACGATTTTCGGCATCCCGTAAACCGAACTTAACGCATATCAGTTTCTCCTTGCGGTCACAGTTTTGACACTCACAGACAGCATCCCATTAGACAAAGCCAGCCTGAAAAAAACGGGTAATAGGTAGAAATTTAAAGCA_-_ATGAAAAAAAGAAATATGAAGTTGATGGGACATGACCATACATCGAGAATGAAGGATGATGACGAAGCTCAACAATTAGCTTCGGACAAAGATAGTGAAGATGCTAATTCAGAAGAAGAGAATAGAAATAACCTTTCAGATGAAGAAAATCAAGATTTTGATTCGGAAGAAGAGGAGTTACAAGAGCATCTTGCAGACATTCCGTTTGAAGAGCTTCAGAAAGTGCGCTCTGATGGTCGAGAATCAACCTTTTCTAAATTCAAGCATGATGCCAAACCCTCAAGAGCTAACAAAAACAGACCTATGGAAATGAGCAGCAAGAAGCCTGTTGGAAGGCTTAGGGAAGTTGTTCAAGGTCC

Fln Alignment:

Contig1624___SRMKDDDEAQQLASDK----DSEDANSEEENRNNLSXXXXXXXXXXXXXLQEHLADIPFEELQKVRSDGRESTFSKFKHDAKPSRANKNRPMEMSSKKPVGRLREVVQ
A9TCW0_______________ARKKVEDESVHEESDEQVSSDSGGSGSGSEDNSEDDSESGSDADSAEEELQSQVADVPFELLQQARSNGQTSSFSRSKKVADTKRANKNRPMEMTSKKPVPRFREVIQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain