SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1562

Length: 1519 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1562

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2489	16/25
SustainPine v2.0	sp_v2.0_unigene17897	6/25
SustainPine v2.0	sp_v2.0_unigene34812	1/25

Source	Descriptions	Term	Type	Identity
AutoFact	PAF1 complex component n=2 Tax=Populus trichocarpa RepID=B9HYK9_POPTR	-	-	45%
FL-Next	tr=Paf1 complex protein; Physcomitrella patens subsp. patens (Moss).	-	-	50%
Blast2go	rna polymerase-associated protein rtf1 homolog	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	0.0	66%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plus-3	IPR004343	-	0.0	-
Sma3	Plus-3 domain, subgroup	IPR018144	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9S430

Fln msg: Distance to subject end: 252 aas, your sequence is shorter than subject: 352 - 568

Fln protein: MMESKTEILRKGDWKILRRDLGCHSKYIDDDDSDDAGTANREASGSRMPLKKRFDSGDKDDDDTGRRDDSDSELSIGSDLYKDDEDREQLGKMSELDRELILAERAEARDNYLMRKRARQNEIRNQQRKETGPPSSRMRSSVKSTRSVKENALSELVARRQKAQDSDIRRELGCHSGSSKGRDSSPSRRKSHASPSLSLSSSSEGEGSGSSGEESDSDGDGPGSADTPSFEDIRSITIRRSKLAKWFMEPFFENIIVGCFVRIGIGMSRSGQSTYRLCMVKNVDATDPDKQYKFENRTTYKYLNCFWGSESSAARWQMARVSDSPPLEKEFSDWEREVERSGGRMISRAEVE

Protein Length: 353

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTGGGGTTCCAGCTCTACAACTTCCTCTTCCTCTGGCGTGCAAAATGCACCTTCAGGACATCGCTTCGACCAACAGGTCCCTCGCTTCCTCTTCCAACAATGCCGACACCCCTCTCAGCAAAAGATAGGCTAACTGTATGTGCTCTCTGACAGGGTTTGGTGATGGTCTAATTGTTGCGTCATACTACACAGGTTTGTACTCTACGACTCCTTTGGCAATGGATACAACGCCTGGATATTCTAACCTCTACCACTCATTCCTATTTCAGTAGGTTTTAGGTTTTGAAGATCTATTGAGGAGTGGTATTTGCAGTCTCTGCTCCAGCCAGGGAACAAAGGACTATTCAATCGGCGTGGGTGTTTAGAGGGGAAAAAAGAAGTTATGGCTGAACTGGAGCATTTGCTGCTAGAAGCAGCTGGTCGAACATCTACCA_-_ATGATGGAAAGCAAAACCGAAATCCTGCGAAAGGGAGACTGGAAGATTCTGCGTCGTGACCTTGGCTGTCACTCAAAATACATTGATGACGATGATTCAGATGATGCTGGGACAGCAAATAGGGAGGCTTCTGGGTCAAGAATGCCCCTGAAAAAGAGATTTGATTCTGGTGACAAGGATGATGATGACACGGGTCGCCGTGATGATTCCGATAGCGAATTATCCATAGGTAGTGATTTATACAAAGATGATGAAGATAGGGAGCAGCTTGGGAAAATGTCTGAACTGGACCGGGAGTTGATTTTGGCAGAACGAGCAGAAGCAAGGGATAATTATTTAATGCGTAAAAGGGCTCGTCAAAACGAGATTAGAAATCAACAACGGAAAGAAACAGGACCTCCATCTTCACGGATGCGCTCTTCTGTGAAATCAACAAGGTCTGTAAAAGAAAATGCTTTGAGTGAATTGGTAGCAAGGCGGCAGAAAGCACAGGATTCTGACATTCGTCGTGAGCTTGGCTGTCATTCTGGTTCATCTAAGGGGCGGGATTCTTCACCTAGTAGAAGAAAATCTCATGCGAGTCCGAGCCTTAGTTTGTCATCCTCTAGTGAAGGAGAAGGAAGTGGAAGCAGTGGCGAAGAATCAGATAGTGATGGTGATGGTCCCGGCTCTGCTGACACTCCCAGCTTTGAAGATATTAGAAGCATAACAATAAGGAGATCAAAACTTGCCAAGTGGTTTATGGAACCATTCTTTGAAAATATCATTGTGGGCTGCTTTGTAAGAATTGGGATAGGAATGTCCAGGTCAGGACAGAGTACTTACCGTCTTTGCATGGTAAAAAATGTTGATGCGACAGACCCTGATAAACAATACAAGTTTGAGAACCGCACCACATACAAGTATTTGAATTGTTTCTGGGGCAGCGAGAGCAGTGCAGCAAGATGGCAGATGGCCAGGGTGTCTGATTCACCTCCACTTGAGAAAGAGTTTTCAGATTGGGAACGGGAAGTAGAACGCAGTGGTGGTCGGATGATTAGTCGAGCAGAAGTTGAGG

Fln Alignment:

Contig1562___ELSIGSDLYKDDEDREQLGKMSELDRELILAERAEARDNYLMRKRARQNEI------RNQQRKETGPPSSRMRSSVKS-TRSVKENALSELVAR----------RQKAQDSDIRRELGCHXXXXXXXXXXXXXXXXHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADTPSFEDIRSITIRRSKLAKWFMEPFFENIIVGCFVRIGIGMSRSGQSTYRLCMVKNVDATDPDKQYKFENRTTYKYLNCFWGSESSAARWQMARVSDSPPLEKEFSDWEREVERSGGRMISRAEV
A9S430_______________EFSYGSDLYRDEEDRHNLAQMTELEREMELADRSEKRDTWLALRKSRGNRQAEFSTPNHRRERDLGPPSSRMRSSVREGTRSKKENALNELVARRQKAQDPSSLRKRGRDSGMTPSREAHSPGRKKPSQSMSFSESDPPSEDDGDSERDDDRSDVGGSGDELEDKGEPEATE---DEIKDIVIRRSKLAKWFMEPFFEEIIVGCFVRIGIGVSSSGQSIYRVCQVKNVDAKDPDKQYKFENFMTYKYLNCFWGDESTAARWQMVRASDQPASQKEISDYLRAVDNAKGRRPLKVDV

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
515	33	66			0.997452
516			66	33	0.997452
520	33			66	0.997452
523		66		33	0.997452
524		66	33		0.997452
525	33			66	0.997452
530	33			66	0.997452
533		66	33		0.997452
538	66		33		0.997452
587	33		66		0.997452
654		66	33		0.997452
660	25		75		0.996473
661		75		25	0.996473
667		25		75	0.996473
668		25	75		0.996473
669	75			25	0.996473
672			25	75	0.996473
674	25	50		25	0.995533
676	75			25	0.996473
677		25		75	0.996473
679		25	75		0.996473
680		75		25	0.996473
681		25	75		0.996473
695	25			75	0.996473
700	75	25			0.996473
703		33		66	0.997452
704	66		33		0.997452
705		33		66	0.997452
1040	66		33		0.997452
1045			66	33	0.997452
1046	66			33	0.997452
1048			33	66	0.997452
1050		66		33	0.997452
1052	66			33	0.997452
1053		33	66		0.997452
1054	33	66			0.997452
1057		33		66	0.997452
1104	66		33		0.997452
1154			10	90	0.90298
1156		10		90	0.90298
1159	90			10	0.90298
1162		10		90	0.90298
1163	90	10			0.90298
1166	90		10		0.90298
1168	90	10			0.90298
1169	90			10	0.90298
1174	90	10			0.90298
1225	50		50		1.0
1231		30		70	1.0
1272			88	11	0.923564
1276	77		22		0.999999
1342		50		50	1.0
1348		28		71	1.0
1350	85		14		0.993533
1369	16		83		0.999991
1381		22		77	0.999999
1390		77		22	0.999999
1447			12	87	0.992554
1475	14		71		0.984337
1486		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain