SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1506

Length: 449 nt

UniGene Fasta

>uagpf_v2_unigene1506
CGTCGTGACCTTGGCTGTCGTGATCTTCGTGACCTCGAATTTGACACTTTTAGATCTGTCTTACACATTCCTGACGAATTTACAGCCAATCATTGATTCTTGTCCCCAACTAAAGGTTTTGAAGCTTCAGGCTTGCAAATATCTTGAGAATTCGGCATTGATTCCACTCCACAGGGGAAGAGCACTTCCGAAGCTCTGTGAGTTGGATTTATCCTATGGCACTCTTAGCCAATCTGCAATTGAAGAACTTTTGGCATGGTGTCCACATCTCACCCATCTGAGTTTGAATGGATGTGTTAATATGCATGACCTTGATTGGAGATTCCAGGCTAGCCATTCTTACAGTGATTCAGAACTACATAGGAAACAAAATAAGTCTGATTTGAGGGATGACCAGATCCATGTGGAAGGAAGCCCAAAACGGTCACTTCAACATCTCAATTGTGTAG

Ace file of the UniGene uagpf_v2_unigene1506

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1329	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/LRR-repeat protein 15 [Arabidopsis thaliana] sp\|Q9SMY8.2\|FBL15_ARATH RecName: Full=F-box/LRR-repeat protein 15 gb\|AEE86191.1\| F-box/LRR-repeat protein 15 [Arabidopsis thaliana]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	f-box lrr-repeat protein 15-like	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	organ formation	GO:0048645	Biological Process	73%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	73%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Mob1/phocein	IPR005301	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A877

Fln msg: Distance to subject end: 119 aas, atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning, your sequence is shorter than subject: 149 - 274

Fln protein: VVTLAVVIFVTSNLTLLDLSYTFLTNLQPIIDSCPQLKVLKLQACKYLENSALIPLHRGRALPKLCELDLSYGTLSQSAIEELLAWCPHLTHLSLNGCVNMHDLDWRFQASHSYSDSELHRKQNKSDLRDDQIHVEGSPKRSLQHLNCV

Protein Length: 150

Fln nts: CGTCGTGACCTTGGCTGTCGTGATCTTCGTGACCTCGAATTTGACACTTTTAGATCTGTCTTACACATTCCTGACGAATTTACAGCCAATCATTGATTCTTGTCCCCAACTAAAGGTTTTGAAGCTTCAGGCTTGCAAATATCTTGAGAATTCGGCATTGATTCCACTCCACAGGGGAAGAGCACTTCCGAAGCTCTGTGAGTTGGATTTATCCTATGGCACTCTTAGCCAATCTGCAATTGAAGAACTTTTGGCATGGTGTCCACATCTCACCCATCTGAGTTTGAATGGATGTGTTAATATGCATGACCTTGATTGGAGATTCCAGGCTAGCCATTCTTACAGTGATTCAGAACTACATAGGAAACAAAATAAGTCTGATTTGAGGGATGACCAGATCCATGTGGAAGGAAGCCCAAAACGGTCACTTCAACATCTCAATTGTGTAG

Fln Alignment:

Contig1506___SNLTLLDLSYTFLTNLQPIIDSCPQLKVLKLQACKYLENSALIPLHRGRALPKLCELDLSYGTLSQSAIEELLAWCPHLTHLSLNGCVNMHDLDWRFQASHSYSDSELHRKQNKSDLRDDQIHVEGSPKRSLQHLNCV
D5A877_______________SNLTLLDMSYTYMTNLQPFIDSCPQLKVLKLQACKYLENTALIPLHKGRALPNLCELDLSYGTLSQSAIEELLAWCPHLTHLSLNGCVNMHDLDWIFGAGNSYVDSEPHRKQNKSDLRDDKINVKGNPSRSLQHLNCV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
80	75			12	0.975346
81	75	25			1.0
82			12	87	0.992554
84			25	75	1.0
85	87		12		0.992554
87	75			25	1.0
89		75	12	12	0.975346
91	87			12	0.992554
92	75	12	12		0.975346
96		12		87	0.992554
98		12	87		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain