SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1496

Length: 881 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1496

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1354	14/16
SustainPine v2.0	sp_v2.0_unigene2069	1/16

Source	Descriptions	Term	Type	Identity
AutoFact	HPP integral membrane domain-containing protein [Arabidopsis thaliana] dbj\|BAC41883.1\| unknown protein [Arabidopsis thaliana] gb\|ABN04790.1\| At5g62720 [Arabidopsis thaliana] gb\|AED97647.1\| HPP integral membrane domain-containing protein [Arabidopsis thali	-	-	45%
FL-Next	tr=HPP family protein, expressed; Oryza sativa subsp. japonica (Rice).	-	-	69%
Blast2go	hpp integral membrane domain-containing protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	72%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	HPP	IPR007065	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
391	16			83	0.994512
392	16	83			0.994512
393		16		83	0.994512
398		83		16	0.994512
400		16	83		0.994512
402		16	83		0.994512
403	83			16	0.994512
404	83	16			0.994512
553		10		90	0.90298
557		90	10		0.90298
558			10	90	0.90298
560	90			10	0.90298
561			10	90	0.90298
563	90	10			0.90298
565	90	10			0.90298
569	10		90		0.90298
715		87		12	0.992554
728	12		87		0.992554
729		87		12	0.992554
740	14	85			0.993533
751	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain