SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1491

Length: 1114 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1491

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7225	20/21

Source	Descriptions	Term	Type	Identity
AutoFact	BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TRM7_PHYPA	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	bah-phd domain-containing protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	87%
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Histone H3	IPR000164	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABY9

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 193 - 221

Fln protein: MVDSRELQVSYTKFRSAAMAKSRPTKKILDSYTIKGTDKVVKVGDCVVMRAEDAQKPPYIARVEKIEADGRGNHVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQ

Protein Length: 194

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTCACTTCCCAATTTGCCAGTCCTTTCCCACCTTTTCCCTCCTTCCCTCCGTCAACCGCCGTACTTTTAACATTTCTGCGCTCGCTTCCCGTCAAATGCCGTGCATTCCCGTTTCTGCTGACCCTTTGTCGTTGCCGCTGCTGATATCCGCGTTATCATCGCACAGTCGTGGGATCGATCCGCGTTGATTCGGAACCTCCTTCAGGGTTTGGACCTGGTAAGGAAGTACAGAAAGCTCGCCCTATTGTTCGCCCGCTTCGAGTTTCGAAAGGTTGATCTCGTCGCACTCCATCGTCAAGCTCGTTTGTCGTTCGCCTGCCTCGTTTCAGGCGCCTGTAGAATTTAAAAGGAAAGCTCGCAGACAGACAGACAAAAATACGCCCTAGGGTTTCATTGGCTCTTAGTCGCCCGCGGACAATGGCGGACATATAGATAGATAAATACGTGGTCGCTTGCATTTATTTTCACCGGAAAAGCACGCAGGCGGGATATCCACGAGCGTCGT_-_ATGGTCGATTCTCGGGAGCTCCAAGTCTCGTATACAAAATTTCGATCTGCAGCGATGGCGAAATCCAGGCCGACGAAAAAAATCTTGGACTCATACACTATCAAGGGAACCGACAAGGTCGTCAAAGTCGGGGACTGTGTGGTAATGCGTGCGGAGGATGCCCAGAAGCCACCGTATATAGCTAGGGTGGAGAAGATAGAAGCCGATGGCCGGGGAAACCATGTGAGGGTCCGTGTGCGCTGGTATTATCGGCCGGAGGAGTCCATAGGAGGCCGTCGCCAATTCCACGGCGCGAAGGAGCTTTTCCTTTCGGATCATTTCGACGAGCAAAGCGCCGATACAATTGAGGGCAAATGTAGTGTGCATACTTTCAAGAACTACACCAAACTGGATAGCGTCGGCTCCGAAGACTATTTCTGCCGTTTTGAATACAACGCCGCAACTGGAGGGTTCACTCCCGATAGGGTGGCCGTGCACTGCAAATGTGAAATGCCGTACAACCCTGATGTTTTAATGGCTCAGTGCGAAGCATGCAAGGATTGGTTCCATCCTCCATGTGTGAATTTAACGACTGAACAGTT

Fln Alignment:

Contig1491___MAKSRPTKKILDSYTIKGTDKVVKVGDCVVMRAEDAQKPPYIARVEKIEADGRGNHVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQ
D5ABY9_______________MAKSKPMKKVLDSYTIKGTDKVVKVGDCVVLRAEDAQKPPYIARVEKIEADGRGNHVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQ

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
94			14	85	0.993533
96			14	85	0.993533
98	85	14			0.993533
100	85			14	0.993533
102			12	87	0.992554
103			12	87	0.992554
108	12		87		0.992554
113	12	87			0.992554
261	50		50		1.0
328		50	50		1.0
373	77		11		0.968132
374	88		11		0.923564
375	88	11			0.923564
376	88			11	0.923564
378			88	11	0.923564
379	88	11			0.923564
386	11		88		0.923564
401	75		25		1.0
431	25	75			1.0
443	85			14	0.993533
445	85		14		0.993533
446	85	14			0.993533
568		40		60	1.0
569	40		60		1.0
594	80			20	0.995493
595	80			20	0.995493
596	80	20			0.995493
597			20	80	0.995493
643	66			33	0.997452
644		66		33	0.997452
814		75		25	0.996473
816	75		25		0.996473
817	75			25	0.996473
818			25	75	0.996473
819	25			75	0.996473
822	75			25	0.996473
823		75		25	0.996473
829		75		25	0.996473
830		25	75		0.996473
832	75	25			0.996473
833			75	25	0.996473
834		25	75		0.996473
866	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
387	400	CAGA CAGA CAGA CA	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain