SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1489

Length: 1277 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1489

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21088	30/32

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=DEAD-box ATP-dependent RNA helicase 20	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	dead-box atp-dependent rna helicase	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 171 - 504

Fln protein: S*PWLSLRDGSRLVIFFVTKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGKAYTYFTAANARFAKDLIKVLEEAGQSISPSLAEMGRSAAASGGYGGFRDRWRGSGNQSWGR*

Protein Length: 172

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGATGGTAGCCGCTTGGTTATCTTTTTTGTCACTAAAAAAGGCTGTGACCAAGTTACTAGGAAACTTCGTATGGATGGATGGCCAGCACTATCAATTCATGGAGATAAAAGCCAAGCTGAGAGAGACTGGGTCTTGTCAGAATTTAAGGCTGGAAAGAGCCCTATTATGACTGCTACCGATGTTGCTGCACGAGGCTTGGATGTGAAGGATATAAAATGTGTCATCAACTATGATTTTCCTGGCTCCATGGAGGATTATGTGCATCGTATTGGCCGTACTGGACGAGCTGGTGCCAAGGGCAAGGCATATACATACTTCACTGCTGCAAATGCAAGGTTTGCTAAGGATCTGATAAAAGTACTCGAAGAAGCAGGACAATCTATTAGCCCCAGTCTGGCTGAGATGGGTCGAAGCGCTGCAGCTAGTGGAGGTTATGGAGGGTTTAGGGACCGTTGGAGAGGTTCTGGAAATCAGTCATGGGGAAGATAG___ACTGTGCCCATCTTCTATTCAAATGATGGATGATTTGTGGCTGTGCCCTCTTAAGCGGTTCATTGGAATCATTAAATATTTTGTACCATAATAAGTTTGAAATTTTAGAAATGGAAAAATTCGTCATCTCTGAAAAAGATGGAAGGACATTTCCATGTCTACCATTTTTGTAAGAGAAAATGTAAAGATCAGCTAGAGAATCACTGACTCACTAAATTTTTGTTTTTACATAATCTATAAGCATTCTTTTTGTTGTATCAAAGACCTGGTTTTGGTATCGTAGGTAAAAGCACTTTGCTCTCTGACCGCGAACCTTCTAACTCTGGCGTGCAGGAATTTTAAGCCCCCGTTTTAGTTTAGGAAGTTCCTTTGATCGATGTAATTATGATAAACAATGACTTGTGAGATAAGTATCTCGTCCTCAGTCTGAATGTACTTTTTCATTGGTCGGTCGGTTGATAACTTTATACTGTTGTCGTTAAAAGCACAAGTTTAGTCGATACCTCCAAGGTTCTATGGCTATTTTCAATTTTAACATCAAAAATCTACATGTGCTTTTTATAGCGCAGTAAGTCTATACCGACTTTGATTTTCAGCAGATGAATGTAGTGCTCAGCTGTCGACTTTCCCATGCATGATGAATTTCACAAAGTAACATGCACAGGCCTACACAATTCTAGTGTTAATCTGTATATTTTTCTCTATATGGGTATGCATTATATATAATAATCCACAAACTAAACCAGGAGTGATATATATACT

Fln Alignment:

Contig1489___LRDGSRLVIFFVTKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIXXXXXXXXXXXXXXXFTAANARFAKDLIKVLEEAGQSISPSLAEMXXXXXXXXXXXXFRDRWRGSGNQSWGR
B8LKZ7_______________IMDGSRLLIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTAYTYFTAANARFARDLIKILEEAGQSISPSLAEMGRSSAASGGYGGFRDRGRGSGNLPWGR

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
204	75	25			0.996473
205		75	25		0.996473
206		75		25	0.996473
209		25		75	0.996473
210		25	75		0.996473
222			75	25	0.996473
223	75	25			0.996473
224	25		75		0.996473
250		33		66	1.0
254	66		33		1.0
256		66	33		1.0
258	66	33			1.0
264	66		33		1.0
265		33		66	1.0
267			33	66	1.0
274		33	66		1.0
275	33	66			1.0
459		10	90		0.90298
461	90			10	0.90298
462		10	90		0.90298
465			10	90	0.90298
467		10		90	0.90298
468		11	88		0.923564
469			87	12	0.992554
470	87			12	0.992554
473		14	85		0.993533
475			11	88	0.923564
478		11	88		0.923564
479	11		88		0.923564
480		11	88		0.923564
481	88			11	0.923564
483	10	90			0.90298
487		10	90		0.90298
489	90			10	0.90298
492		10	90		0.90298
493		10	90		0.90298
499			90	10	0.90298
500	90	10			0.90298
502	90	10			0.90298
586			62	37	1.0
619		44		55	1.0
768	28			57	1.0
947		75		25	0.996473
948	75		25		0.996473
952		75	25		0.996473
954		25	75		0.996473
956	75	25			0.996473
958		25	75		0.996473
959	25			75	0.996473
997	50		50		1.0
1017		50	50		1.0
1057	33			66	0.997452
1065	33	66			0.997452
1071			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain