SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1463

Length: 396 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene1463
TCGTGACCTTGGCTGTCACTCATCTTAACAAGAGTCTTTCTGCTTTATCTCTTACAGACAGTCCTGATTCAGAAGATACAGATAAAGGAAAAAAGAAAGAGCTCGAACAAAATATGGCAGCAAGTACACTAACATGTAAAGATAAGGACACGGTCCAACAACCGCATAGTATACCATTACACAAACAAATTCCTTCAGGCACAACAATCAGGGTTGTTCCCCAACCAGGGCCTGTGAGTGGCACTGGTCCGCAGATTAGGAATAACACATGGGTTGCGATGAACTTAACTGATAATGCAATGCAGAATAAACATAATTCCACTTAAATGCATTGCTATATATTTTGGAACTGATTTCAGATACGACTGGTATATAAATTGTCAAATCTTGAGAATC

Ace file of the UniGene uagpf_v2_unigene1463 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14576	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RH31_RICCO	-	-	9.99995e-41	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	double-stranded rna-binding protein 2-like	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Uncharacterised protein family UPF0406	IPR019146	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADH3

Fln msg: your sequence is shorter than subject: 108 - 505

Fln protein: VTLAVTHLNKSLSALSLTDSPDSEDTDKGKKKELEQNMAASTLTCKDKDTVQQPHSIPLHKQIPSGTTIRVVPQPGPVSGTGPQIRNNTWVAMNLTDNAMQNKHNST*

Protein Length: 109

Fln nts: TCGTGACCTTGGCTGTCACTCATCTTAACAAGAGTCTTTCTGCTTTATCTCTTACAGACAGTCCTGATTCAGAAGATACAGATAAAGGAAAAAAGAAAGAGCTCGAACAAAATATGGCAGCAAGTACACTAACATGTAAAGATAAGGACACGGTCCAACAACCGCATAGTATACCATTACACAAACAAATTCCTTCAGGCACAACAATCAGGGTTGTTCCCCAACCAGGGCCTGTGAGTGGCACTGGTCCGCAGATTAGGAATAACACATGGGTTGCGATGAACTTAACTGATAATGCAATGCAGAATAAACATAATTCCACTTAA___ATGCATTGCTATATATTTTGGAACTGATTTCAGATACGACTGGTATATAAATTGTCAAATCTTGAGAATC

Fln Alignment:

Contig1463___NKSLSALSLT--DSPDSEDTDKGKKKELEQNMAASTLTCKDKDTVQQPHSIPLHKQIPSGTTIRVVPQP--GPVSGTGPQIRNNTWVAMNLTDNAMQNKHNST
D5ADH3_______________NAAMAAWSAVKNDSPDSEDTNTGTKKELEQNMTASTTACKDKDTVQQPHSIPLHKQLPSGTTIRVVPQPLKGPVSGTGLPTRNNTWVAMNLTDNAMQSKHNST

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain