SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1441

Length: 1083 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1441

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene739	29/32

Source	Descriptions	Term	Type	Identity
AutoFact	YDG_SRA multi-domain protein	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	zinc finger	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of methylation-dependent chromatin silencing	GO:0090309	Biological Process	73%
Blast2go	centromeric heterochromatin assembly	GO:0031508	Biological Process	73%
Blast2go	DNA methylation on cytosine within a CG sequence	GO:0010424	Biological Process	73%
Blast2go	cell division	GO:0051301	Biological Process	73%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	73%
Blast2go	histone binding	GO:0042393	Molecular Function	73%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	73%
Blast2go	methyl-CpNpN binding	GO:0010429	Molecular Function	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%
Blast2go	double-stranded methylated DNA binding	GO:0010385	Molecular Function	73%
Blast2go	methyl-CpG binding	GO:0008327	Molecular Function	73%
Blast2go	chromatin binding	GO:0003682	Molecular Function	73%
Blast2go	methyl-CpNpG binding	GO:0010428	Molecular Function	73%
Blast2go	chromocenter	GO:0010369	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQP3

Fln msg: your sequence is shorter than subject: 248 - 830

Fln protein: PQVNRQMEDVIKSLKGRVEDGSGSDSGDEEDQDQTEGIKDEEAVDEKRVNLQQAEGPEEPKVVPASTLESPKSTEQENRLEVEEAGDKKLQAHVNETSLNADQENSIKELHSKYPRYSEELLTNMLADQDGDLKELEALLKTLQRQEIRAANRKVSGPSSSKATDNTDVSTESPPSKLQNASKGKTRGKSAKKRESDTTLSVGRVHKTRRKTASDDVKAASKTPTRDNVNSASPSSPLVVVSDSDFE*

Protein Length: 249

Fln nts: CCACAGGTGAATAGACAAATGGAGGATGTAATAAAATCTCTTAAAGGTAGGGTTGAGGATGGGTCTGGGAGTGATAGCGGGGATGAGGAAGATCAAGATCAGACCGAGGGCATTAAGGATGAGGAAGCTGTAGATGAAAAGCGTGTAAATCTGCAGCAAGCAGAAGGCCCGGAGGAGCCCAAGGTTGTACCTGCGAGCACATTAGAATCCCCTAAAAGTACAGAACAGGAGAACCGTCTTGAGGTTGAGGAAGCTGGTGACAAAAAGCTCCAGGCACATGTGAATGAAACGTCTTTGAATGCAGATCAAGAAAATTCCATCAAGGAGCTTCACAGCAAGTATCCTCGTTACTCGGAAGAACTTTTGACGAATATGCTGGCTGATCAGGATGGCGATTTGAAAGAGCTTGAAGCACTCTTAAAAACATTACAACGCCAAGAGATTAGAGCTGCTAATCGAAAGGTGTCAGGTCCATCATCTTCAAAGGCAACAGATAACACAGATGTTTCCACGGAATCACCACCCTCAAAGCTACAGAATGCATCTAAGGGCAAAACCAGAGGAAAGAGTGCCAAGAAGAGAGAAAGTGATACAACTTTATCCGTAGGAAGAGTTCACAAAACGCGTCGGAAAACTGCTTCCGACGATGTGAAGGCCGCTTCTAAAACACCAACAAGGGATAACGTAAACTCTGCATCTCCTTCAAGTCCGCTTGTAGTTGTGTCAGATAGTGACTTCGAGTAA___GCCACCAATTATACGGTGAAAAAGGATTGCAAAGGACAATCAGAGTGGTGTTTTTCTACATTTATGGTGTTATTCTACATTTAAAATTGGGGTAATATATGAATATTCAATTGTAATTCATTTTATCGTCGAGCAAATCCATTTGAAATGTTGGCTACTTTTTTCCAGTTGCTTACTGCTCTGTAATGTGTCCTATTTTTGAACTATTCAGATATTAGTGCGACATATTCATGCGAGTTGAACCGTCGTAAAGATATGCTCAAGGTTGTGCAACTTTTAGCCATATCTTTAATATGTTTAAATCAATTTCCAAAGTTTCTTGGTTATCTCCTTGGCTGA

Fln Alignment:

Contig1441___PQVNRQMEDVIKSLKGRVXXXXXXXXXXXXXXXXTEGIKDEEAVDEKRVNLQQAEGPEEPKVVPASTLESPKSTEQENRLEVEEAGDKKLQAHVNETSLNADQENSIKELHSKYPRYSEELLTNMLADQDGDLKELEALLKTLQRQEIRAANRKVSGPSSSKATDNTD-VSTESPPSKLQNASKGKTRGKSAKKRESDTTLSVGRVHKTRRKTASDDVKAAS----KTPTRD
B8LQP3_______________PQVNRQMEDVIRSLKGRVEDGSGSDGGDEEDQDQSEGIKIDEAVDEKCVNMQQAEGPEKPKVVPANTLESATNNEQEKSLEVEEAVDTKLQAHVNERPLNADQEKSINELHNKYPRYSEELLKNMLADQDGDLKELEALLKTLQRQEIRAANRKVSGPSSSKATDNTNVVSTESSPLKLQNASNGKIKGKSPKKRGRDASSSVGKVYKTRRKTASDNENAKSSGCPKTPTRD

SNPs (tot: 112)

Position	A %	C %	G %	T %	Probability
171		25	75		0.996473
173	75			25	0.996473
174		25	75		0.996473
176	75			25	0.996473
178	25	75			0.996473
181	75			25	0.996473
182	75			25	0.996473
185		25		75	0.996473
204	80		20		0.995493
207			20	80	0.995493
208	80			20	0.995493
212	75	25			0.996473
214		75		25	0.996473
215		75	25		0.996473
216		75	25		0.996473
219	75		25		0.996473
220	75			25	0.996473
221	75	25			0.996473
223		25	75		0.996473
239		25	75		0.996473
273		25		75	0.996473
309		25	75		0.996473
310	75		25		0.996473
313	75		25		0.996473
314	75			25	0.996473
317	75	25			0.996473
318	75	25			0.996473
319	75			25	0.996473
322			25	75	0.996473
324		75		25	0.996473
325	75		25		0.996473
329	75	25			0.996473
330			75	25	0.996473
331		25	75		0.996473
404		33		66	1.0
407	66	33			1.0
408	66		33		1.0
409	66			33	1.0
412		33	66		1.0
418	66	33			1.0
419	66			33	1.0
473		16		83	0.994512
477	83		16		0.994512
478			83	16	0.994512
480	16			83	0.994512
483	83			16	0.994512
486	62		37		1.0
489	14		28		1.0
490		14		85	0.993533
492	28			71	1.0
494	71	28			1.0
495	71			28	1.0
496	71			28	1.0
501	71		28		1.0
502	71			28	1.0
506	71	28			1.0
508	71	14			0.984337
513	87	12			0.992554
515	87			12	0.992554
516		12		87	0.992554
519			12	87	0.992554
520	12			87	0.992554
522		80	20		0.999996
523	70			30	1.0
524		90		10	0.90298
530	70	20		10	0.999998
531	70		10	20	0.999998
533		80	20		0.999996
534	80		20		0.999996
537		70	20		0.999998
538	70			20	0.999998
539		90		10	0.90298
540	20	80			0.999996
541	10	90			0.90298
646	33		66		1.0
648	88	11			0.923564
649	88	11			0.923564
650	88			11	0.923564
651		88		11	0.923564
652			11	88	0.923564
659			88	11	0.923564
660	88	11			0.923564
661	11	88			0.923564
697		11		88	0.923564
698	88		11		0.923564
699	88			11	0.923564
703	88		11		0.923564
705	88	11			0.923564
709			18	81	0.999994
710			81	18	0.999994
712	72	9	18		0.999994
714		72	27		1.0
715	18			81	0.999994
720		81	18		0.999994
721	72	18			0.999994
722	81			18	0.999994
727			81	18	0.999994
805		18	72		0.999994
811	18			81	0.999994
812		20		80	0.999996
813		20		80	0.999996
815		80		20	0.999996
816			20	80	0.999996
817	80		20		0.999996
819	80			20	0.999996
820			20	80	0.999996
822		20		80	0.999996
827	10			90	0.90298
878		27		72	1.0
996			85	14	0.993533
998		14		85	0.993533
1000	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain