SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1407

Length: 566 nt

UniGene Fasta

>uagpf_v2_unigene1407
CGTCGTGACCTTGGCTGTCACTCAACCCAAAACAAAGAAGAGCCATATACCTTGCGACTACCAAAACGTCGTGACCTTGGCTGTCACTCATGTTGATGCGGTAGGATTAGGTCACTATGGACGCTGTGAAAATTACTGCAAGAGGCAGGTAGAAAGATGGGCAAAGCAATATCTAGCTTCAACTGGTGAAGGAAAACCAGATCGAAGTCCAAGGATGTTGGAACTCATTGATTGGCTCAAGCAACACATACCAGCTGAAGACTTTAAAATAGGTCAAAGACTGGTCTTGTTCATGGAGACTTTCGGATTGATAATCTTCTGTTCCATCCATCAGAGGAACGTGTCATTGGTGTTTTAGATTGGGAATTATCAACATTGGGGGACCCAATGTCTGATGTTGCTTACAACTGCATGTGTTTTCTCATCAACAACAATGAGTTTCCAGTTCCTCATTATGGCTTTGATAATGGGATAATGCCAGAAGGAGTTCCTTCTCTGGAAGAGCATCTGGCGAATTATTGTGCTGCAGCTGGTACCCAGTGGCCTGCTAAAGATTGGAAGTTTTA

Ace file of the UniGene uagpf_v2_unigene1407

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene215	6/7

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-CoA dehydrogenase [Arabidopsis thaliana] gb\|AAM14036.1\| unknown protein [Arabidopsis thaliana] gb\|AAN86198.1\| unknown protein [Arabidopsis thaliana] gb\|AEE74461.1\| acyl-CoA dehydrogenase [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	48%
Blast2go	acyl- dehydrogenase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	78%
Blast2go	Valine, leucine and isoleucine degradation	00280	78%
Blast2go	beta-Alanine metabolism	00410	78%
Blast2go	Propanoate metabolism	00640	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	78%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	78%
Blast2go	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3		IPR013764	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RWP4

Fln msg: Overlapping hits, possible frame ERROR between 280 and 274, Distance to subject end: 499 aas, your sequence is shorter than subject: 188 - 820

Fln protein: VVTLAVTQPKTKKSHIPCDYQNVVTLAVTHVDAVGLGHYGRCENYCKRQVERWAKQYLASTGEGKPDRSPRMLELIDWLKQHIPAEDFKIxxxxGLVHGDFRIDNLLFHPSEERVIGVLDWELSTLGDPMSDVAYNCMCFLINNNEFPVPHYGFDNGIMPEGVPSLEEHLANYCAAAGTQWPAKDWKF

Protein Length: 189

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCCAAAACAAAGAAGAGCCATATACCTTGCGACTACCAAAACGTCGTGACCTTGGCTGTCACTCATGTTGATGCGGTAGGATTAGGTCACTATGGACGCTGTGAAAATTACTGCAAGAGGCAGGTAGAAAGATGGGCAAAGCAATATCTAGCTTCAACTGGTGAAGGAAAACCAGATCGAAGTCCAAGGATGTTGGAACTCATTGATTGGCTCAAGCAACACATACCAGCTGAAGACTTTAAAATAxxxxxxxxxxxxGGTCTTGTTCATGGAGACTTTCGGATTGATAATCTTCTGTTCCATCCATCAGAGGAACGTGTCATTGGTGTTTTAGATTGGGAATTATCAACATTGGGGGACCCAATGTCTGATGTTGCTTACAACTGCATGTGTTTTCTCATCAACAACAATGAGTTTCCAGTTCCTCATTATGGCTTTGATAATGGGATAATGCCAGAAGGAGTTCCTTCTCTGGAAGAGCATCTGGCGAATTATTGTGCTGCAGCTGGTACCCAGTGGCCTGCTAAAGATTGGAAGTTTTA

Fln Alignment:

Contig1407___TLAVTQPKTKKSHIPCDYQNVVTLAVTHVDAVGLGHYGRCENYCKRQVERWAKQYLASTGEGKPDRSPRMLELIDWLKQHIPAEDFKIGxxTGLVHGDFRIDNLLFHPSEERVIGVLDWELSTLGDPMSDVAYNCMCFLINNNEFPVPHYGFDNGIMPEGVPSLEEHLANYCAAAGTQWPAKDWKF
A9RWP4_______________TLPGMDPKERRAIYGEMARVLAAIHAADVDAIGLSRYGRKDNYCKRQVERWTAQYHQSTGKGKPDPDPNMLEVIQWLRENIPAEDGTAGxxTGIVHGDYRLDNLIFHPSEPRVIGVLDWELSTLGNQMSDAAYNCLPYVIDSDELPGKNIGFSKQLV-DGIPSLPEYVAEYCSAADVSWPANTWNF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
68			75	25	0.996473
70		75		25	0.996473
72			25	75	0.996473
73		25	75		0.996473
75		75	25		0.996473
77	25			75	0.996473
78	25			75	0.996473
79			75	25	0.996473
80	25		75		0.996473
82	25			75	0.996473
83		25	75		0.996473
84	25			75	0.996473
85	25	75			0.996473
86	75			25	0.996473
87		75	25		0.996473
89		75	25		0.996473
90	25		25		0.995533
126		25		75	0.996473
185		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain