SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1375

Length: 860 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1375

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3151	11/13

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleic acid binding protein (Fragment) n=1 Tax=Cucumis melo subsp. melo RepID=E5GBX4_CUCME	-	-	65%
FL-Next	sp=Probable lysine-specific demethylase ELF6; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	lysine-specific demethylase ref6-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of histone acetylation	GO:0035067	Biological Process	73%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	73%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	73%
Blast2go	histone H3-K9 demethylation	GO:0033169	Biological Process	73%
Blast2go	leaf development	GO:0048366	Biological Process	73%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	73%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	73%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	JmjC domain	IPR003347	-	-
Sma3	Transcription factor jumonji, JmjN	IPR003349	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-type/integrase, DNA-binding	IPR013087	-	-
Sma3		IPR013129	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
29	66		33		0.997452
30			66	33	0.997452
34		66		33	0.997452
35		66	33		0.997452
39		66		33	0.997452
41		66	33		0.997452
42	66		33		0.997452
43		33		66	0.997452
44		66		33	0.997452
45	66		33		0.997452
46	66			33	0.997452
47		33	66		0.997452
49	66	33			0.997452
50	66			33	0.997452
51		33	66		0.997452
98	66		33		0.997452
317		20	80		0.995493
319			80	20	0.995493
321	80		20		0.995493
322	80			20	0.995493
325	80	20			0.995493
328			80	20	0.995493
329	80		20		0.995493
333	80		20		0.995493
340	25	75			0.996473
375	83	16			0.994512
376	83		16		0.994512
380		83		16	0.994512
381	83		16		0.994512
383		16	83		0.994512
391	83	16			0.994512
392	83			16	0.994512
394	83			16	0.994512
397		16		83	0.994512
399		16		83	0.994512
400	16	83			0.994512
705	83		16		0.994512
706	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain