SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1354

Length: 2544 nt

UniGene Fasta

>uagpf_v2_unigene1354
CGTCGTGACCTTGGCTGTCACTCAATCGTCGTGACGTTGTCTGTCACTGTGGGGTTGAGTCTTGCCGGGAACGGAAGTTACAGAGAGCTTTTGGATACTTTTCTGAAGCAAAAGTGCAGAAGAAAAGGCGATTTCATGGCGGACGCTCCAAGGGTTGATAGACTTGGCGGTATCGATCTGTCAGTCAAGCTTGAAGAGACGGAGAATGAGGAGAAATTGATGACCGACAGAGAGTCTGAAAATGAGATTAAAAATGGCGTGGTGGATTTCTTCTCTGAGAAGGCTGTTCGAGGTCTGGGCTTCGAATTCCGGCCCTCACCTGGCGATGGAGCGCCCTCTGTGGCTAGTCTTGGCGAGGGGTTGCGTCTCGGTTCGCAGAAAACTGAGAACAAAGAAGAAGGGCCCTCCTCCTCCTCCTCCAAGGGATTTAACCTTTCGCTATTGCCTGCCAACACGGGAAGCGATCGTTCAACTGTGGAAGACGGGATGTCACCTGTTCGTTCGCAGGAGCCTTCCAATCCGGATGAAGGGGAACCCAAGAGCGAGTTGATGATGTTACAGGTGGAGCTCAACCGTATGAACGAAGAAAACCAGAGGCTAAGACTCATGTTGAACTACGTAAGCAAGAACTACGGTAATCTGCAGATGCACCTTATGTCCGTTATGCAGCAACAACCTCCGCCAGAGAAGGTGGAAGAGAAATTGAATGGATCGTCGGAGGGAGTGAAGGTGGATGTAGCCGGCCCCGTGCAACGACAGTTTTTGGATCTCGTACCCATCTCGAGCCACGGGACCGATTCCCAACATTCTCTCTCCTCCGATACCCAGGATGCCGACGAGGTTGAAGAGACCGCTAAGTCCATTAACAATGAAGTCCTCTCAAAGAAACGCGACGTGGCCACCGCTAATTCCACGGATAAGCCACGTACTTGTGATGTCCGAGTCCAACAACAACAACAACGACCTGGTAACGATCCTGCTGCTAATTCGCCTACTGCTTTGAACGCCCAAGAAAAGGGCCACCCCGATAGCCCCGATCATGAGTCCTGGACTGCTAACAAAGCTCAGAAAGTGGCCAATAAGTGCGCTGTTGATCAAACCGAAGCCACCATCAGAAAAGCCAGAGTTTCAGTCCGGGCCAGATCCGAGGCTCCCATGATAAGCGATGGGTGCCAATGGAGAAAATACGGGCAGAAGATGGCAAAGGGCAATCCATGCCCGAGAGCGTACTACCGATGCACTATGGCTGTTGGCTGCCCCGTTCGCAAACAGGTTCAGAGGTGCGCCGAGGACAGGTCAGTTCTGGTAACAACATACGAGGGAAGTCATAATCACCCGCTACCGCCTGCAGCTACAGCCATGGCATCAACCACGTCAGCAGCTGCCTGCATGCTTCTTTCAGGCTCTACAACAAGCAACGACGGAGGCTTCAATTCGAGTTTCATGCAGGCCGCCGCAGGAAGCCTAATGTCGTGCTCACCCGCCTCCATGGCCACCATCTCTGCCTCCGCTCCATTTCCTACTGTCACGCTCGACCTAACGCAAAACCCTAACCCTAATATGTATCATCGACAGCCCTCCGGCTTCCCCATGCCCCTCGGAGGTTTCCCACAACTACCCTCACACCCACCTCAAATCTTCTCTCACTCCCTCTTCAATACTTCCAAATTCGCTCCCCTTAGCGGTCAGCAGTTCGATCCGCAGCAACAGCAGGTACCCCACTTTTCAGGTCACCCGATGCAGCAGCAGACTCATATGCCGGTGCCCATTTCTCAATACAAAGCACCACAATCGTCTCTAATGGACACTGTTAGTGCAATTACAGCAGATCCCAACTTCACTGCCGCCCTTGCAGCTGCCATCACGTCAATAATTAGCGGCCAGTCCAACAACGCCAACACTATTCCATCGCCGGCTCCTCCCTGTGCCAGGGCTGATAATCCTGCTTCGGCTAAATTGCTCCACTGATTCTTAGACCGTAATTTATCTTCTGCCATGGAGGACCAATCTTTTTGCAGAGGGACTCAAATTCTTTGCAGATGTAACACTTGTGTCTGTCTACGGAGACGGTCATTCGGTGGAGTAACATGATTTGTTGAGAGGTCATTACAAATGCAGGAATAGCCAATTTGGGGTACATGTTGTGTTGATAGTCATCAGTATAGAACAGAGGCCAAACATTCTTTCATACACAGGGTTTTCTCCAGAGTTTGTATCTGGTTGGAACACAGCTAATATATACATCACTTTTCAAAGAAGAATAAGGAGAGAGATACTGGCTTTGTGAATAGACGTGTCACATCACATTTCATGACTACATTCTTTTCAGCTGTATCCCACTTGAACTTGAGGTCGCAGGCCTATCCTGAAATACCACTACAACACGGCTTGGCTGCCATTACTTGAAATGACAAAGGTTATTGTGAATATGCTAGGAGATCACTTTTACCTTCAGATCCAGAGCTATATAATTTGCTATTTTTGCATAATTTATTTGTTTAGAGGTTTACAAAATGTATGGTCAGACATAGCGGTAATCATCAA

Ace file of the UniGene uagpf_v2_unigene1354

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7343	112/118
SustainPine v2.0	sp_v2.0_unigene79927	1/118

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RXH5_RICCO	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	48%
Blast2go	wrky transcription factor 6-like	-	-	58%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H7H0

Fln msg: your sequence is longer than subject: 611 - 535

Fln protein: MADAPRVDRLGGIDLSVKLEETENEEKLMTDRESENEIKNGVVDFFSEKAVRGLGFEFRPSPGDGAPSVASLGEGLRLGSQKTENKEEGPSSSSSKGFNLSLLPANTGSDRSTVEDGMSPVRSQEPSNPDEGEPKSELMMLQVELNRMNEENQRLRLMLNYVSKNYGNLQMHLMSVMQQQPPPEKVEEKLNGSSEGVKVDVAGPVQRQFLDLVPISSHGTDSQHSLSSDTQDADEVEETAKSINNEVLSKKRDVATANSTDKPRTCDVRVQQQQQRPGNDPAANSPTALNAQEKGHPDSPDHESWTANKAQKVANKCAVDQTEATIRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSVLVTTYEGSHNHPLPPAATAMASTTSAAACMLLSGSTTSNDGGFNSSFMQAAAGSLMSCSPASMATISASAPFPTVTLDLTQNPNPNMYHRQPSGFPMPLGGFPQLPSHPPQIFSHSLFNTSKFAPLSGQQFDPQQQQVPHFSGHPMQQQTHMPVPISQYKAPQSSLMDTVSAITADPNFTAALAAAITSIISGQSNNANTIPSPAPPCARADNPASAKLLH*

Protein Length: 612

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGTCGTGACGTTGTCTGTCACTGTGGGGTTGAGTCTTGCCGGGAACGGAAGTTACAGAGAGCTTTTGGATACTTTTCTGAAGCAAAAGTGCAGAAGAAAAGGCGATTTC_-_ATGGCGGACGCTCCAAGGGTTGATAGACTTGGCGGTATCGATCTGTCAGTCAAGCTTGAAGAGACGGAGAATGAGGAGAAATTGATGACCGACAGAGAGTCTGAAAATGAGATTAAAAATGGCGTGGTGGATTTCTTCTCTGAGAAGGCTGTTCGAGGTCTGGGCTTCGAATTCCGGCCCTCACCTGGCGATGGAGCGCCCTCTGTGGCTAGTCTTGGCGAGGGGTTGCGTCTCGGTTCGCAGAAAACTGAGAACAAAGAAGAAGGGCCCTCCTCCTCCTCCTCCAAGGGATTTAACCTTTCGCTATTGCCTGCCAACACGGGAAGCGATCGTTCAACTGTGGAAGACGGGATGTCACCTGTTCGTTCGCAGGAGCCTTCCAATCCGGATGAAGGGGAACCCAAGAGCGAGTTGATGATGTTACAGGTGGAGCTCAACCGTATGAACGAAGAAAACCAGAGGCTAAGACTCATGTTGAACTACGTAAGCAAGAACTACGGTAATCTGCAGATGCACCTTATGTCCGTTATGCAGCAACAACCTCCGCCAGAGAAGGTGGAAGAGAAATTGAATGGATCGTCGGAGGGAGTGAAGGTGGATGTAGCCGGCCCCGTGCAACGACAGTTTTTGGATCTCGTACCCATCTCGAGCCACGGGACCGATTCCCAACATTCTCTCTCCTCCGATACCCAGGATGCCGACGAGGTTGAAGAGACCGCTAAGTCCATTAACAATGAAGTCCTCTCAAAGAAACGCGACGTGGCCACCGCTAATTCCACGGATAAGCCACGTACTTGTGATGTCCGAGTCCAACAACAACAACAACGACCTGGTAACGATCCTGCTGCTAATTCGCCTACTGCTTTGAACGCCCAAGAAAAGGGCCACCCCGATAGCCCCGATCATGAGTCCTGGACTGCTAACAAAGCTCAGAAAGTGGCCAATAAGTGCGCTGTTGATCAAACCGAAGCCACCATCAGAAAAGCCAGAGTTTCAGTCCGGGCCAGATCCGAGGCTCCCATGATAAGCGATGGGTGCCAATGGAGAAAATACGGGCAGAAGATGGCAAAGGGCAATCCATGCCCGAGAGCGTACTACCGATGCACTATGGCTGTTGGCTGCCCCGTTCGCAAACAGGTTCAGAGGTGCGCCGAGGACAGGTCAGTTCTGGTAACAACATACGAGGGAAGTCATAATCACCCGCTACCGCCTGCAGCTACAGCCATGGCATCAACCACGTCAGCAGCTGCCTGCATGCTTCTTTCAGGCTCTACAACAAGCAACGACGGAGGCTTCAATTCGAGTTTCATGCAGGCCGCCGCAGGAAGCCTAATGTCGTGCTCACCCGCCTCCATGGCCACCATCTCTGCCTCCGCTCCATTTCCTACTGTCACGCTCGACCTAACGCAAAACCCTAACCCTAATATGTATCATCGACAGCCCTCCGGCTTCCCCATGCCCCTCGGAGGTTTCCCACAACTACCCTCACACCCACCTCAAATCTTCTCTCACTCCCTCTTCAATACTTCCAAATTCGCTCCCCTTAGCGGTCAGCAGTTCGATCCGCAGCAACAGCAGGTACCCCACTTTTCAGGTCACCCGATGCAGCAGCAGACTCATATGCCGGTGCCCATTTCTCAATACAAAGCACCACAATCGTCTCTAATGGACACTGTTAGTGCAATTACAGCAGATCCCAACTTCACTGCCGCCCTTGCAGCTGCCATCACGTCAATAATTAGCGGCCAGTCCAACAACGCCAACACTATTCCATCGCCGGCTCCTCCCTGTGCCAGGGCTGATAATCCTGCTTCGGCTAAATTGCTCCACTGA___TTCTTAGACCGTAATTTATCTTCTGCCATGGAGGACCAATCTTTTTGCAGAGGGACTCAAATTCTTTGCAGATGTAACACTTGTGTCTGTCTACGGAGACGGTCATTCGGTGGAGTAACATGATTTGTTGAGAGGTCATTACAAATGCAGGAATAGCCAATTTGGGGTACATGTTGTGTTGATAGTCATCAGTATAGAACAGAGGCCAAACATTCTTTCATACACAGGGTTTTCTCCAGAGTTTGTATCTGGTTGGAACACAGCTAATATATACATCACTTTTCAAAGAAGAATAAGGAGAGAGATACTGGCTTTGTGAATAGACGTGTCACATCACATTTCATGACTACATTCTTTTCAGCTGTATCCCACTTGAACTTGAGGTCGCAGGCCTATCCTGAAATACCACTACAACACGGCTTGGCTGCCATTACTTGAAATGACAAAGGTTATTGTGAATATGCTAGGAGATCACTTTTACCTTCAGATCCAGAGCTATATAATTTGCTATTTTTGCATAATTTATTTGTTTAGAGGTTTACAAAATGTATGGTCAGACATAGCGGTAATCATCAA

Fln Alignment:

Contig1354___GDGAPSVASLGEGLRLGSQKTENK--EEGPXXXXXKGFNLSLLPANTGSDRSTVEDGMSPVRSQEPSNPDEGEPKS--ELMMLQVELNRMNEENQRLRLMLNYVSKNYGNLQMHLMSVMQQQPPPEKVEEKLN------GSSEGVKVDVAGPV-QRQFLDLVPISSHGTDSQHSLSSDTQDADEVEETAKSINNEVLSKKRDVATANSTDKPRTCDVRVQQQQQRPGNDPAANSPTALNAQEKGHPDSPDHES--WTANKAQKVANKCAVDQT-EATIRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSVLVTTYEGSHNHXXXXXXXXXXXXXXXXXXXXXXGSTTSNDGGFNSSFMQAAAGSLMSCSPASMATISASAPFPTVTLDLTQNPNPNMYHRQPSGFPMPLG----GFPQL-PSHPPQIFSHSLFNTSKFAPLSGXXXXXXXXXVPHFSGHPMQQQTHMPVPISQYKAPQSSLMDTVS----AITADPNFXXXXXXXXXXXXXGQSNNANT
F6H7H0_______________GDERREVDFFAEKTRSVSVKKENSHVDEAAITDLDVNTGLNLLTANAGSDQSTVED----------ENPDRENKRAKIEVAQLQVELERMNAENQKLRGMLNQVTNNYSTLQMHLVTLMQQQSQQNRGAESLQEHGSVGGKSDEKKHEVAGAVVPRQFIDLGPTA-------------TADTDEPSQ--------------------SSSEERTRDLSGSPQNHQE------------NGKGAGREESPESETQGWVQNKASKLSPPKTIDQSAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGTHNHPLPPAAMAMASTTSAAANMLLSGSMSSADGLMNPNFL---ARTILPCS-SNMATISASAPFPTVTLDLTHTPSPLQYQRPTSQFPVPFAAPAQSFPSAQTSSLPQVFSQALYNQSKFSGLQLSQDME--------SAHQAPPTLHQPQP--------ASLADTVSAATAAITADPNFTAALAAAITSIIGGGAAHPNT

SNPs (tot: 240)

Position	A %	C %	G %	T %	Probability
265		20	80		0.995493
270		20	80		0.995493
271	80	20			0.995493
274			20	80	0.995493
275		80	20		0.995493
276		20		80	0.995493
278		80	20		0.995493
281	20			80	0.995493
282		20	80		0.995493
283	80			20	0.995493
284		20	80		0.995493
338	25		75		0.996473
393	80			20	0.995493
396	80	20			0.995493
398	75			25	0.996473
399	75			25	0.996473
400	75		25		0.996473
402	75	25			0.996473
403	75			25	0.996473
406	75			25	0.996473
407		25	75		0.996473
408	25		75		0.996473
409		25	75		0.996473
410		75		25	0.996473
412	25	75			0.996473
491		40	60		1.0
546	83	16			0.994512
548	83	16			0.994512
550		83		16	0.994512
553		16	83		0.994512
557	83	16			0.994512
560	83			16	0.994512
561		16		83	0.994512
562	16		83		0.994512
563		16		83	0.994512
565	83	16			0.994512
566	16	83			0.994512
611		16	83		0.994512
638			25	75	1.0
639	75			25	1.0
644	75		25		1.0
646		25		75	1.0
650		75		25	1.0
651	75		25		1.0
653	75	25			1.0
659		87		12	0.992554
660	12	12		75	0.975346
661	12			87	0.992554
797		75	25		0.996473
798	75			25	0.996473
801			75	25	0.996473
807	75			25	0.996473
809			25	75	0.996473
810		75	25		0.996473
812		75		25	0.996473
813	75		25		0.996473
814	75			25	0.996473
817		25		75	0.996473
841		20		80	0.995493
843		80		20	0.995493
847		80		20	0.995493
850		20	80		0.995493
851		20	80		0.995493
855	80	20			0.995493
856	80			20	0.995493
858	80			20	0.995493
859		20	80		0.995493
863			80	20	0.995493
915		40		60	1.0
933		83	16		0.994512
934	83			16	0.994512
941		14		85	0.993533
944		14	85		0.993533
945	71	14	14		0.984337
948	14			85	0.993533
951		14	71	14	0.984337
952	85			14	0.993533
954			14	85	0.993533
956		85		14	0.993533
957	85		14		0.993533
958	85			14	0.993533
963	85			14	0.993533
964	85	14			0.993533
965	14	85			0.993533
1075			16	83	0.994512
1077	83			16	0.994512
1080	83	16			0.994512
1081	83	16			0.994512
1082			83	16	0.994512
1088	83			16	0.994512
1089	83		16		0.994512
1091	83	16			0.994512
1093		16	83		0.994512
1098	16	83			0.994512
1102		16		83	0.994512
1104	83	16			0.994512
1129	83	16			0.994512
1132		83	16		0.994512
1133	83			16	0.994512
1136		16	83		0.994512
1137		16		83	0.994512
1140		83	16		0.994512
1141	85	14			0.993533
1142		14	85		0.993533
1144		85		14	0.993533
1145		85	14		0.993533
1146	12	12	62	12	0.962769
1147		12	87		0.992554
1148	12		62	25	1.0
1150	12	75	12		0.975346
1151	75			25	1.0
1152			87	12	0.992554
1153	87		12		0.992554
1154			12	75	0.975346
1156		87		12	0.992554
1157			87	12	0.992554
1158	75			25	1.0
1159		12	87		0.992554
1160	12		87		0.992554
1264	44	55			1.0
1282		10	90		0.90298
1285		10		90	0.90298
1286		90	10		0.90298
1287	90			10	0.90298
1290		10	90		0.90298
1291		10	90		0.90298
1293			90	10	0.90298
1294		90	10		0.90298
1297		90		10	0.90298
1299	90	10			0.90298
1300	10		90		0.90298
1301		10	90		0.90298
1302	90			10	0.90298
1315		16	83		0.999991
1318	83	16			0.999991
1319	83		16		0.999991
1320		83		16	0.999991
1321	81		18		0.999994
1324	81	18			0.999994
1326	81			18	0.999994
1327		81	18		0.999994
1329	81	18			0.999994
1330			81	18	0.999994
1332			81	18	0.999994
1333	81	18			0.999994
1335		18	81		0.999994
1356		90		10	0.90298
1387	90		10		0.90298
1388			90	10	0.90298
1389		90	10		0.90298
1391		10	90		0.90298
1395		90	10		0.90298
1402		10	90		0.90298
1644	83		16		0.994512
1645	50	16	33		1.0
1690		50		50	1.0
1737		80	20		0.995493
1738	80	20			0.995493
1739			80	20	0.995493
1754		85		14	0.993533
1755	71		28		1.0
1756			85	14	0.993533
1759	71			28	1.0
1760		14	85		0.993533
1770		83	16		0.994512
1772			83	16	0.994512
1776	16		83		0.994512
1778		83		16	0.994512
1855		22	77		0.999999
1856		77	22		0.999999
1857		77		22	0.999999
1859	22	77			0.999999
1866	77			11	0.968132
1869		11		88	0.923564
1870			88	11	0.923564
1871		88		11	0.923564
1872	11	88			0.923564
1876	88		11		0.923564
1909	77			22	0.999999
1910	77			22	0.999999
1916			12	87	0.992554
1919		87	12		0.992554
1921			12	87	0.992554
1922		87		12	0.992554
1925	14	85			0.993533
1958		88	11		0.923564
1959			11	88	0.923564
1964		88		11	0.923564
1965			11	88	0.923564
1967	88	11			0.923564
1968	80	20			0.999996
1969			10	90	0.90298
1971		10	90		0.90298
1972		90	10		0.90298
1976	90	10			0.90298
1977		90		10	0.90298
1980	90		10		0.90298
1981		10		90	0.90298
1983		90	10		0.90298
1985		10		90	0.90298
1987		10	90		0.90298
1988	90			10	0.90298
1990	10	90			0.90298
2064		16		83	0.999991
2070		16		83	0.999991
2072			14	85	0.999981
2073	71			28	1.0
2074		85	14		0.999981
2076		14	85		0.999981
2077	71			28	1.0
2079	85			14	0.999981
2081	14	14	71		0.999974
2082		14	71	14	0.999974
2084		85	14		0.999981
2085	85	14			0.999981
2089	14		85		0.999981
2090		14	85		0.999981
2164	78	21			1.0
2168	78		21		1.0
2170		78	21		1.0
2173		21		78	1.0
2174	78	21			1.0
2176	78			21	1.0
2179	78		21		1.0
2181	78			21	1.0
2183	78			21	1.0
2184		21	78		1.0
2185	21		78		1.0
2188	82			17	1.0
2189	82		17		1.0
2192	82	17			1.0
2195		82	17		1.0
2196		5	15	80	1.0
2197		15	5	80	1.0
2199		85	15		1.0
2200	80		5	15	1.0
2201		15		85	1.0
2204	78			15	1.0
2240	93			6	0.999364
2394	63	36			1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
404	420	CCT CCT CCT CCT CCT CC	17
946	961	CAA CAA CAA CAA CAA C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain