SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1347

Length: 1057 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1347

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene967	11/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BcpLH protein [Brassica rapa subsp. pekinensis] gb\|AAT77418.1\| dsRNA-binding protein LH-c [Brassica napus]	-	-	9.0e-13	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	dsrna-binding protein	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	0.0	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUQ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 82 aas, your sequence is shorter than subject: 247 - 346

Fln protein: MVPPAQMFKNRLQEYAQKNSLPLPLYEVVNEGQDHLPQFKCTVIINGAKYESLPGFTNKKASQNAAAKAAVEDLEMQGLIVESKEKIRPKGILAEVVRRKNMPPPSYRFTRTFTATVVVNGVSYTGGPSDNQRDAQNKAALEALQAIDPKAAFEVLQANDPQYCNSLPHVEVNAKNDSKQPTAQPDNLASDNQLLEGTESQSAGNGLEKSIVDGAPAPEKGLREDRCGECICSWTWYRKDKGEGCP*

Protein Length: 248

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTGCACCTTCCCTTTCTAAAACCCTAACCGGAGGCGTTACAAAGATACGTTACACTTGGCGAAAAACCAGTGAAATGCTATTATTTATTGTAGCAATGGAAGGAGCTATATAAGGGCAGTTCCGGCAACAAATAGGGCTATCTACACAGAAATTAGGGCAATAATTAGGGAAAATTTAGTCTTGCAGGCGAGCTTTTGTTTTTGGGTTTCTCGTCTCATTTCAGTTCTTGAA_-_ATGGTGCCTCCTGCGCAGATGTTCAAGAACAGATTGCAAGAATATGCACAGAAGAACTCTTTGCCATTGCCTCTCTATGAAGTTGTAAATGAGGGCCAAGACCATCTTCCGCAATTCAAGTGCACTGTAATAATCAATGGGGCAAAGTATGAATCCCTTCCTGGTTTCACCAACAAGAAGGCATCACAGAATGCTGCAGCTAAGGCAGCTGTCGAAGATTTGGAAATGCAAGGGTTGATTGTTGAGTCCAAAGAGAAAATACGGCCTAAAGGTATCCTTGCAGAAGTTGTTAGAAGGAAGAATATGCCGCCTCCGAGTTATCGTTTTACAAGGACTTTTACAGCAACTGTGGTTGTTAATGGGGTTTCCTATACTGGAGGTCCTTCAGACAATCAAAGGGACGCTCAAAACAAGGCTGCACTTGAAGCACTTCAGGCAATCGACCCCAAGGCTGCGTTTGAAGTACTTCAGGCAAACGACCCCCAATATTGTAATTCGTTACCGCATGTTGAAGTTAATGCGAAAAATGATTCCAAACAGCCAACTGCACAACCGGATAACTTGGCATCTGATAATCAGCTATTAGAAGGAACTGAATCTCAATCGGCGGGAAATGGTCTAGAAAAGTCAATTGTCGACGGTGCACCTGCTCCTGAAAAAGGACTCAGAGAAGACAGATGTGGAGAATGCATCTGCAGTTGGACATGGTATAGAAAAGACAAAGGTGAAGGATGCCCATGAAGCCGAAAGGGGAATGTCAGATATAAATGATGCACTTCGCAGTGAGTGGACAGGCCA

Fln Alignment:

Contig1347___MFKNRLQEYAQKNSLPLPLYEVVNEGQDHLPQFKCTVIINGAKYESLPGFTXXXXXXXXXXXXXVEDLEMQGL--IVESKEKIRPKGILAEVVRRKNMPPPSY-------XXXXXXXXXXXXNGVSYTGGPSDNQRDAQNKAALEALQAIDPK-AAFEVLQANDPQYCNSLPHVEVN-AKNDSKQPTAQPDNLASDNQLLEGTESQSAGNGLEKSIVDGAPAPEK
A9NUQ0_______________MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAAAEAAVKKLVNQGLLPIEEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCPTFTAIVEINGAFYAGDPANSKKDATNKAACKAIRAIDPHYFQAESIINNGSEH----PTEECDVSKSDSKIPA---DNWTSNNQIVGGSDSHLPANCIEKVTVENAPAVEK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
41		33		66	0.997452
205	83	16			0.994512
209			16	83	0.994512
213	83			16	0.994512
217			83	16	0.994512
218	83		16		0.994512
219			83	16	0.994512
221	20			80	0.995493
222		20		80	0.995493
224		20		80	0.995493
225	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain