SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1341

Length: 305 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene1341
GAAATGAATCCACATTCTATAATGATTCTGCTACTCAGGATTTGCCTTGTGCTTTCCCATTTTGTGGCAGTGCAGTGCCGTTACAGATTCTGGGAACCTGGCCATTCTGAAGGCCTTGTACAATAACTTGGAAAACAAGGAGATTCTCAGTGACTGGAAGGGCAACGATGCTTGCGCGGGCTGGAGTCACATACAATGCCAGGGAAGCTTTGTCGCAGGCATTTCCATGCAGAATCTCGGCCTGAAAGGTAAGCTTCCTGAAAATCTGAACCAGCTCAAATCTTTAACTACCATGTCTCTGCAGC

Ace file of the UniGene uagpf_v2_unigene1341 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9226	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor-like protein kinase [Solanum chmielewskii] gb\|AAX38307.1\| receptor-like protein kinase [Solanum chmielewskii] gb\|AAX38308.1\| receptor-like protein kinase [Solanum chmielewskii] gb\|AAX38309.1\| receptor-like protein kinase [Solanum chmielewskii] gb	-	-	4.0e-30	46%
FL-Next	sp=Protein STRUBBELIG-RECEPTOR FAMILY 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	37%
Blast2go	receptor-like protein kinase	-	-	7.2939e-41	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	7.2939e-41	62%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q6R2J8

Fln msg: Distance to subject end: 598 aas, atg_distance in limit (1-15): atg_distance = 2, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 93 - 703

Fln protein: FCYSGFALCFPILWQCSAVTDSGNLAILKALYNNLENKEILSDWKGNDACAGWSHIQCQGSFVAGISMQNLGLKGKLPENLNQLKSLTTMSLQ

Protein Length: 94

Fln nts: GAAATGAATCCACATTCTATA_-_ATGATTCTGCTACTCAGGATTTGCCTTGTGCTTTCCCATTTTGTGGCAGTGCAGTGCCGTTACAGATTCTGGGAACCTGGCCATTCTGAAGGCCTTGTACAATAACTTGGAAAACAAGGAGATTCTCAGTGACTGGAAGGGCAACGATGCTTGCGCGGGCTGGAGTCACATACAATGCCAGGGAAGCTTTGTCGCAGGCATTTCCATGCAGAATCTCGGCCTGAAAGGTAAGCTTCCTGAAAATCTGAACCAGCTCAAATCTTTAACTACCATGTCTCTGCAGC

Fln Alignment:

Contig1341___VTDSGNLAILKALYNNLENKEILSDWK--GNDACA-GWSHIQCQGSFVAGISMQNLGLKGKLPENLNQLKSLTTMSL
Q6R2J8_______________VTDPSDVQALQVLYTSLNSPSQLTNWKNGGGDPCGESWKGITCEGSAVVTIDISDLGVSGTLGYLLSDLKSLRKLDV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
258	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain