SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1316

Length: 398 nt

UniGene Fasta

>uagpf_v2_unigene1316
CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCATATTTGTTTGTCAAGAGGCGTTTACCACTGATCAAGTCATATCAGCTGATTCTGTTAATACTTCTACCATGGCTTGGTGCAGCTGCCTTTTCTCAGGCAATGAGACCTTTCAACCATGTTTGTCATGTTGGAAAACAATGGGTTATACCAGTAGCTTCGCTGCATGTGTTGTACTTATTGGTGCTCATGGGTGTTACATGGAGAATTAGAAAAGTTGATTTAAATTTGACGAATTCAAAGAGCTGAGCAAGGGAGTAACTATTACGCTTATATTCATAGGAGTTTGGGTTGCACTATACGTTGCTAATGAGGTTCATGATGAAAAATCAACAAGGTCTTATGGTTGCATCGAGGTTCAT

Ace file of the UniGene uagpf_v2_unigene1316

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1125	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	regulator of G-protein signaling 1 [Arabidopsis thaliana] gb\|AAN12971.1\| unknown protein [Arabidopsis thaliana] gb\|AEE77116.1\| regulator of G-protein signaling 1 [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Signal transducer, putative; Ricinus communis (Castor bean).	-	-	42%
Blast2go	regulator of g-protein signaling 1	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	71%
Blast2go	response to water deprivation	GO:0009414	Biological Process	71%
Blast2go	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	71%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	71%
Blast2go	positive regulation of GTPase activity	GO:0043547	Biological Process	71%
Blast2go	regulation of cell proliferation	GO:0042127	Biological Process	71%
Blast2go	sugar mediated signaling pathway	GO:0010182	Biological Process	71%
Blast2go	G-protein coupled receptor activity	GO:0004930	Molecular Function	71%
Blast2go	GTPase activator activity	GO:0005096	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of G protein signalling	IPR000342	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RMQ6

Fln msg: Separated hits, possible frame ERROR between 279 and 282, Distance to subject end: 238 aas, your sequence is shorter than subject: 133 - 404

Fln protein: RRDLGRRDLGCHSYLFVKRRLPLIKSYQLILLILLPWLGAAAFSQAMRPFNHVCHVGKQWVIPVASLHVLYLLVLMGVTWRIRKVDLNLTNSxxLSKGVTITLIFIGVWVALYVANEVHDEKSTRSYGCIEVH

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACTCATATTTGTTTGTCAAGAGGCGTTTACCACTGATCAAGTCATATCAGCTGATTCTGTTAATACTTCTACCATGGCTTGGTGCAGCTGCCTTTTCTCAGGCAATGAGACCTTTCAACCATGTTTGTCATGTTGGAAAACAATGGGTTATACCAGTAGCTTCGCTGCATGTGTTGTACTTATTGGTGCTCATGGGTGTTACATGGAGAATTAGAAAAGTTGATTTAAATTTGACGAATTCAAAxxxGCTGAGCAAGGGAGTAACTATTACGCTTATATTCATAGGAGTTTGGGTTGCACTATACGTTGCTAATGAGGTTCATGATGAAAAATCAACAAGGTCTTATGGTTGCATCGAGGTTCAT

Fln Alignment:

Contig1316___YLFVKRRLPLIKSYQXXXXXXXPWLGAAAFSQAMRPFNHVCHVGKQWVIPVASLHVLYLLVLMGVTWRIRKVDLNLTNSKxLSKGVTITLIFIGVWVALYVANEVHDEKS
B9RMQ6_______________HIFVKRRLPPIRSYIFLPVILLPWIAGAAFIHVKKPLNARCHMETHWIIPVICLHASFIAALVGFTAAIRHIEFRFDELKxLWKGILVSASSIGLWVAAYILNEVHDDVS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
16		66		33	0.997452
21		33	66		0.997452
23		33	66		0.997452
29	33		66		0.997452
30			66	33	0.997452
34	33			66	0.997452
36	66			33	0.997452
37		66		33	0.997452
39	33	66			0.997452
40	66			33	0.997452
68		75	25		0.996473
82	80		20		0.995493
91	20		80		0.995493
116		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain