SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1278

Length: 480 nt

UniGene Fasta

>uagpf_v2_unigene1278
CGTCGTGACCTTGGCTGTCACTCATATGCCTTATCTCGTTCTCTTGGCTGTGGCCATTGTTCGTCGTGACCTTGGCTGTCACTCATGTCTACAAGGGTCAAATTGTAGGTATCCATCAAAGAACAGGCGACCTGTCCCTAAATGTTTGCAAGAGGAAGGCTGCAACAAATGTCCGTTCAAACAAGGAACAGACAGTGGTCCTTAATGCACCTTTGGATTTCAGTCTGGATGATTGTATTGAATATATCCAAGAGGATGAACTAGTTGAAGTCACACCATTGAGCGTGCGCATGTGCAAGAACCCAAGGGCAATGAAGAAAACAAAATAACTTTCACCATTAACATACTACAATAAATATATCAAATATTTACACCATAAAATAACTTTTTCACCTGTATAATCAGTGGTCTTGACTCTTTATTACGTTATCCAGGATCTGAAGACGGACTATCTAGATTTCCCAAGCAGTAGGTAACCTT

Ace file of the UniGene uagpf_v2_unigene1278

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein TypA [Trifolium pratense]	-	-	77%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	87%
Blast2go	elongation factor family protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast RNA processing	GO:0031425	Biological Process	89%
Blast2go	translational elongation	GO:0006414	Biological Process	89%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	89%
Blast2go	translation elongation factor activity	GO:0003746	Molecular Function	89%
Blast2go	GTPase activity	GO:0003924	Molecular Function	89%
Blast2go	GTP binding	GO:0005525	Molecular Function	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GTP-binding protein TypA	IPR006298	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9H9W4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 109 - 607

Fln protein: S*PWLSLICLISFSWLWPLFVVTLAVTHVYKGQIVGIHQRTGDLSLNVCKRKAATNVRSNKEQTVVLNAPLDFSLDDCIEYIQEDELVEVTPLSVRMCKNPRAMKKTK*

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATGCCTTATCTCGTTCTCTTGGCTGTGGCCATTGTTCGTCGTGACCTTGGCTGTCACTCATGTCTACAAGGGTCAAATTGTAGGTATCCATCAAAGAACAGGCGACCTGTCCCTAAATGTTTGCAAGAGGAAGGCTGCAACAAATGTCCGTTCAAACAAGGAACAGACAGTGGTCCTTAATGCACCTTTGGATTTCAGTCTGGATGATTGTATTGAATATATCCAAGAGGATGAACTAGTTGAAGTCACACCATTGAGCGTGCGCATGTGCAAGAACCCAAGGGCAATGAAGAAAACAAAATAA___CTTTCACCATTAACATACTACAATAAATATATCAAATATTTACACCATAAAATAACTTTTTCACCTGTATAATCAGTGGTCTTGACTCTTTATTACGTTATCCAGGATCTGAAGACGGACTATCTAGATTTCCCAAGCAGTAGGTAACCTT

Fln Alignment:

Contig1278___VYKGQIVGIHQRTGDLSLNVCKRKAATNVRSNKEQTVVLNAPLDFSLDDCIEYIQEDELVEVTPLSVRMCKNPRAMKKTK
B9H9W4_______________VYKGQIVGIHQRTGDLSLNVCKKKAATNVRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPSSIRMCKNPKLAKKTR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
65		60		40	1.0
66			60	40	1.0
68	33	66			1.0
72	66			33	1.0
87		66	33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain