SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1245

Length: 1699 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1245

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene771	22/26

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB83113.1\| putative protein [Arabidopsis thaliana] gb\|AAO41871.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50669.1\| unknown protein [Arabidopsis thaliana] gb\|AEE80373.1\| uncharacterized protein [Arab	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	calmodulin binding protein	-	-	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1645	IPR012442	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYX3

Fln msg: Separated hits, possible frame ERROR between 1413 and 1473,

Fln protein: METLRVVSAVGMVNNTSGSSSCSNMEGKGKFYYDYDSACSTPYVSAPSSPGRPGAGFFFSAPTSPMHPLVSRRAEHNFLANTTADGIPMVEDDEASVSTGSDFEFSARFSELEGANSMSTEPTMSSADELFCNGQIRPLKLSTHLQKPQFLGPLIDFEEEEEESKAGSSFAVAEPVGERGRDRLCRDKSHHRRTRSLSPLRSSAQWVEEEHSKLEDEEAGDADEKSKNIASSSASSSSSTKRRGSKRWSLKDLLLYRSKSEGRDHTRERHWALSFASPAKQSSEKPRYxxxxxxxxxxxxxxxxxxxxxNTTKGPARRGTHVSAHELHYTANRAQAEELRRKTFLPYRQGVLGCLGFLSPPTFPQRHVLHSLY*

Protein Length: 375

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTAATATAAACGTTAAAATCGGAGAAAGACGGGGAGGCGGGCAGGGTCGTGAGGTTGGCGTCGGTCGATTTGTTCACTTACGGCGGCCGGCCGGCGGCAGCACAAGAAAAATATGATGTGAATGGTAGGTTGCTGCTCTATACAACGTCGTTTCCTCCCTCTTCCCTTTCCTGGCAGTGGGGTTGACAGACCGAGTCGCACTAGATTTGGGATTTTTGGGTTTCGAAGAAGCAACACACACAATGCCTAAATAAACCCCTAAAGCCCCATTTCTCCCACACCTTATCGCTTGCGTGTTCTGTTTCTATAAGCGACTTCAACAACTGTTAGTGCTCGGTTGATTTTGCATTCTAATCCTCCCTTTAGATTCGGCAGATTGTGCTTCTTGTTAAATCCCCATCTTGATTCTTGTAATGTAATGTGATTGTCTTATTTTATATATTTTAGCTTGTGCCTTTGCCCACAAGTCTTTGGTAGCTGGGTTGTGCTCTTTTGTTTCAAGCAGTTAGGAACAAGCA_-_ATGGAGACGTTAAGGGTCGTTTCAGCAGTGGGGATGGTGAACAACACAAGCGGTAGCAGCAGCTGCAGCAATATGGAGGGGAAGGGGAAGTTTTATTATGACTATGATAGTGCTTGTTCTACCCCTTATGTGAGCGCTCCTTCCAGCCCTGGAAGACCTGGAGCTGGTTTTTTCTTCAGTGCACCCACCAGTCCTATGCATCCTCTGGTTTCACGCCGTGCCGAGCACAATTTTCTGGCCAACACCACCGCTGATGGGATCCCCATGGTGGAAGATGACGAGGCCTCTGTTTCGACTGGCTCGGATTTCGAGTTCAGTGCGCGATTCTCAGAGCTCGAGGGGGCTAATTCCATGTCGACTGAGCCCACCATGTCTTCGGCCGATGAGCTTTTCTGTAATGGCCAGATTCGGCCATTGAAGCTCTCGACGCATCTGCAGAAGCCACAGTTTTTGGGACCGCTCATAGATTTTGAGGAGGAAGAAGAGGAAAGTAAGGCCGGATCCAGTTTTGCAGTTGCAGAGCCTGTTGGGGAAAGGGGCCGAGACCGTTTGTGTCGGGACAAATCTCACCATCGCAGAACCAGATCACTGTCGCCACTCAGAAGCTCGGCTCAATGGGTAGAAGAAGAGCATTCCAAATTAGAAGATGAAGAAGCTGGGGACGCGGATGAGAAGTCCAAGAACATTGCCTCTTCTTCTGCCTCGTCCTCGAGCTCCACAAAGCGAAGAGGTTCAAAGCGCTGGAGTCTGAAAGATCTGCTCCTGTACAGAAGCAAAAGCGAGGGCAGAGACCACACCAGAGAGCGACACTGGGCTTTATCCTTCGCTAGCCCTGCAAAACAATCCTCAGAGAAACCGAGATACCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAATACCACTAAGGGCCCTGCTAGAAGAGGAACACATGTCTCTGCCCACGAGCTTCACTACACAGCAAACAGGGCTCAGGCGGAGGAGCTCAGGCGAAAAACATTCCTGCCCTACAGACAGGGCGTTCTTGGCTGCTTGGGATTCCTTTCCCCGCCTACATTCCCACAGCGTCATGTGTTGCATTCCCTGTATTAG___TTTTCCGAATTAATAGAATGTGTAAATTCAGT

Fln Alignment:

Contig1245___METLRVVSAVGMVNNTSGSSSCSNMEGKGKFYYDYDSACSTPYVSAPSSPGRPGAG-FFFSAPTSPMHPLVSRRAEHNFLANTTADGIPMVEDDEASVSTGSDFEFSARFSELEGANSMSTEPTMSSADELFCNGQIRPLKLSTHLQKPQFLGPLIDFXXXXXXSKAGSSFAVAEPVGERGRDRLCRDKXXXXXXXXXXXXXXXAQWVEEEHSKLEDEEAGDADEKSKNI-XXXXXXXXXXTKRRGSKRWSLKDLLLYRSKSEGRDHTRERHWALSFASPAKQSSEKPRYPxxxxxxxxxxxxxxxxxxxxNTTKGPARRGTHVSAHELHYTANRAQAEELRRKTFLPYRQGVLGCLGFLS
A9NYX3_______________METLRVVSAVGMVSNTSSS----NTDGNGKFYYDYDSACSTPYVSAPSSPGRPGGGGFFFSAPTSPMHPLVSCRVDHNFMS-TTAAGIPKAEDDEASVSTGSDFEFSARFSELDGADSVATEPTMSSADELFCNGQIRPLKLSTHLQKPQLLGPLIDFEDDEEENKAGSSFAAPEAVGERGRDRLCRDKSRHRRTRSLSPLRSSAQWVEEEPSKLEDEEGGDADDKSKNIASISSSSSSSSTKRRGSKRWSLKDLLLYRSKSEGRGHTRERHWALSFSSPAKQSSEKQKIPxxxxxxxxxxxxxxxxxxxxNPNKGPARRGVPVSAHELHYTANRAQAEELRRKTYLPYRQGLLGCLGFPS

SNPs (tot: 70)

Position	A %	C %	G %	T %	Probability
388	33		66		1.0
486		20		20	0.99255
495			25	75	0.996473
500		75		25	0.996473
504	75			25	0.996473
505	75	25			0.996473
506	25		75		0.996473
527		50		50	1.0
548	50		50		1.0
625	66		33		0.997452
744		66		33	0.997452
745	66		33		0.997452
746		66	33		0.997452
748	66			33	0.997452
753	33			66	0.997452
754	66	33			0.997452
756		33	66		0.997452
757	33	66			0.997452
834		10		90	0.90298
836	90			10	0.90298
839	90			10	0.90298
841	10		90		0.90298
845		90		10	0.90298
846			10	90	0.90298
849			10	90	0.90298
860	10	90			0.90298
957		10		90	0.90298
959			85	14	0.993533
961		85	14		0.993533
962	85			14	0.993533
965		14		85	0.993533
967		85		14	0.993533
971	14	71		14	0.984337
972	71		14	14	0.984337
974		14	14	71	0.984337
975	28		71		1.0
976	85	14			0.993533
977	71		14	14	0.984337
978		28	71		1.0
979	14	71			0.984337
988		28	71		1.0
989	28	71			1.0
1001	12	87			0.992554
1002		75	12		0.975346
1003	62			37	1.0
1005	25		12		1.0
1006	87			12	0.992554
1008	12			87	0.992554
1009		12		87	0.992554
1010		12		87	0.992554
1015			87	12	0.992554
1016	87		12		0.992554
1017		87		12	0.992554
1019	12		87		0.992554
1037			85	14	0.993533
1076		14		85	0.993533
1091			83	16	0.994512
1178		12	87		0.992554
1181	87	12			0.992554
1183	87		12		0.992554
1185		12	87		0.992554
1186	87	12			0.992554
1187	87			12	0.992554
1188			87	12	0.992554
1189	87		12		0.992554
1192	87			12	0.992554
1193			12	87	0.992554
1197	87	12			0.992554
1217	12			87	0.992554
1269			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain