SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1200

Length: 1157 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1200

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3001	47/54
SustainPine v2.0	sp_v2.0_unigene61981	4/54

Source	Descriptions	Term	Type	Identity
AutoFact	serine palmitoyltransferase [Arabidopsis thaliana] ref\|NP_001031796.1\| serine palmitoyltransferase [Arabidopsis thaliana] dbj\|BAB60898.1\| serine palmitoyltransferase [Arabidopsis thaliana] gb\|AAM53317.1\| serine C-palmitoyltransferase like protein [Arabido	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	serine palmitoyltransferase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.3.1.5-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	sphingolipid biosynthetic process	GO:0030148	Biological Process	83%
Blast2go	cell growth	GO:0016049	Biological Process	83%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	serine C-palmitoyltransferase activity	GO:0004758	Molecular Function	83%
Blast2go	transferase activity, transferring nitrogenous groups	GO:0016769	Molecular Function	83%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNV5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 250 - 484

Fln protein: S*PWLSLKKVLNRRFIVVEAIYQNSGQMVPLDEIIRLKEKYKFRVLVDESNSFGVLGKTGRGLTEHYGIPIQKVDIITAGMGYALATTGGFCTGSAKVVDHQRLSSAGYCFSASLPPYLASAAIKAIDVLEESHELLVRLQENVTLLWNGLSQVRGLKVMSNALSPLVFLQLENTSGSFKSDSMLLQEIVDHMLEDEAVLLTVSKRSLLDNCKLPAGIQLFVSAAHKKSDLLQVIQSLKSVVESVLDRK*

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAAGGTTTTGAACCGGCGATTTATAGTAGTAGAAGCTATTTATCAGAATTCAGGTCAAATGGTTCCCTTGGATGAAATTATAAGATTGAAGGAGAAGTATAAGTTCAGAGTATTGGTTGATGAAAGCAACTCATTTGGTGTGCTGGGTAAAACTGGAAGAGGTCTTACAGAACATTATGGAATTCCGATTCAAAAAGTTGATATTATAACTGCTGGTATGGGGTATGCTTTGGCAACTACTGGAGGCTTTTGTACAGGAAGTGCAAAAGTTGTTGATCACCAGCGTCTCAGTAGTGCAGGTTACTGCTTTTCCGCATCTTTGCCACCTTATCTAGCAAGTGCTGCGATTAAAGCAATTGATGTTTTGGAAGAAAGTCATGAGCTTCTTGTCAGATTACAAGAAAATGTTACTCTTCTATGGAACGGTTTGTCACAAGTACGGGGTCTAAAAGTTATGAGTAATGCCTTGTCACCGTTGGTCTTTCTACAACTGGAAAATACATCTGGTTCATTTAAGAGTGACTCAATGTTGCTTCAGGAGATTGTTGATCATATGTTGGAGGATGAGGCAGTACTGTTGACTGTGTCTAAACGATCTTTGCTAGACAACTGCAAACTGCCAGCTGGTATCCAATTGTTCGTATCTGCAGCTCACAAAAAATCTGATCTGTTACAAGTTATTCAGTCACTGAAGAGTGTGGTGGAGTCTGTACTTGATAGAAAATGA___CGACTATACTTTAACCAATTTATGGTAATACACTTATGATATGATGGTGTATGGTTGATTGAAAGTTTGGAATTTGCCAGTCTGATGTCCTCAAAGATGTAATTTATTTGAAGAAAAATTACATATATTAAGACATCAAACCTTTTGTGCTCTGTATCATCTTTATATCCTGTATACTTTCATTCATGTTCAGATAGGTCAGGCAACTAATATCTTTATATATTGGCAATGGTTTTGTTTTATTTAAAATGTTTACAGTCCCTTATTTAATGTTAACTGGGATCAATGTATATTGGCAGGAGAGTTTATGTTTCATAGCATGTATTTTTATGGAAGATACTAAATTGAGAAAGTATCCTTGTGCGAGATTGATAACTGATAATAGGAGATAATTGTTAAATAGTT

Fln Alignment:

Contig1200___LKKVLNRRFIVVEAIYQNSGQMVPLDEIIRLKEKYKFRVLVDESNSFGVLGKTGRGLTEHYGIPIQKVDIITAGMGYALATTGGFCTGSAKVVDHQRLSSAGYCFXXXXXXXXXXXXIKAIDVLEESHELLVRLQENVTLLWNGLSQVRGLKVMSNALSPLVFLQLENTSGSFKSDSMLLQEIVDHMLEDEAVLLTVSKRSLLDNCKLPAGIQLFVSAAHKKSDLLQVIQSLKSVVESVLDRK
B8LNV5_______________VKKVLNRRFIVVEAIYQNSGQMVPLDEIIRLKEKYNFRVLVDESHSFGVLGKTGRGLTEHYGIPIQKVDIITAGMGYALATTGGFCTGSAKVVDHQRLSGAGYCFSASSPPYLASAAITAMDVLEESPELLVRLQENVTLLWKGLSQARGLKVTSNALSPLFFLQLENTSGSFKNDSMLLQEIVDRMLEDAAVLLTVSKRSLLDNCKLPAGIQLSVSAAHTKSDLLQVIQSLKSVVEAVLDRK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
159		25		75	0.996473
160			25	75	0.996473
162		25	75		0.996473
166	25			75	0.996473
167		25	75		0.996473
173		25	75		0.996473
175	75		25		0.996473
176	75			25	0.996473
177	75	25			0.996473
182		25	75		0.996473
360	88	11			0.923564
363	88		11		0.923564
364	72	18		9	0.999994
367		27	72		1.0
368		84	15		0.999986
374		23	76		1.0
375	69	15		15	0.999985
377		7	23	7	1.0
378			23	76	1.0
379	61	23	7		1.0
380	69	7		23	1.0
381	61	7	23	7	1.0
382			76	23	1.0
385	76	15	7		0.999983
387		23		76	1.0
388	23	7	69		1.0
516	87	8		4	0.999414
517		87	12		1.0
518	87			8	0.999414
519	83	16			1.0
520		87	8	4	0.999414
523	8		91		0.999766
528	82	13		4	1.0
529	82		4	13	1.0
530	82	8	4	4	0.999136
531	8	4		86	0.999539
991			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain