SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1195

Length: 1739 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1195

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27926	54/59

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine synthase n=1 Tax=Picea sitchensis RepID=A9NS10_PICSI	-	-	89%
FL-Next	sp=Cysteine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	cysteine synthase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cysteine synthase.	EC:2.5.1.47	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Cysteine and methionine metabolism	00270	91%
Blast2go	Sulfur metabolism	00920	91%
Blast2go	Metabolic pathways	01100	91%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	cysteine biosynthetic process	GO:0019344	Biological Process	91%
Blast2go	cysteine synthase activity	GO:0004124	Molecular Function	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS10

Fln msg:

Fln protein: MMTMSIQTQFQSNTSVRLGLGVAEAAPISKRSPIVKGYPTYKPEARKQLRLKAAVCENGRKRFTTLCKAVSSVEPQIDVQPLNIAEDVTQLIGKTPMVYLNSVVKGCVANIAAKLEIMEPCCSVKDRIGYSMITDAEAKGAISPGKSILVEPTSGNTGIGLAFIAAAKGYKLILTMPASMSLERRVLLRAFGAELVLTEAAKGMKGAVQKAEEILSKTPNAYMLQQFDNPANPKVHYETTGPEIWEDTKGKVDILVAGIGTGGTVTGVGQYLKGKNPNIKVIGVEPTESNILSGGKPGPHKIQGIGAGFIPRNLDVDILDEVIQVSSDEAVEMAKQLALQEGLMVGISSGAAAAAAIEVAKRSGNSGKLIAVVFPSFGERYLSTVLFQSIREECEKMQPEP*

Protein Length: 403

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTAATCTCGCAAAATAAGAAAAGAACGGTTTCCTCTCACGATCTCATCTCCAAGTCAACCACAAGGCTCAGCATTGATCGGTTCCCTGTAGGCTCGTTATTTAGCATGCACAAATAGCGTAGTACAGAAAGAAGTTTGGGGTTGGAGACATAGAGTGAACAA_-_ATGATGACGATGAGCATACAAACCCAATTTCAGTCCAACACTTCAGTCAGGCTTGGCCTTGGGGTAGCCGAAGCTGCCCCAATTTCTAAGCGCAGCCCTATTGTTAAGGGCTATCCAACCTACAAACCGGAGGCTAGGAAACAGCTGAGGCTGAAGGCAGCAGTGTGTGAAAATGGGAGGAAAAGGTTCACTACCCTGTGCAAGGCGGTTTCTTCTGTGGAACCTCAGATTGATGTGCAACCCCTCAATATTGCAGAAGATGTTACTCAGCTGATTGGAAAGACACCAATGGTGTATCTTAACAGTGTTGTGAAAGGATGCGTTGCAAACATTGCTGCAAAGCTTGAAATCATGGAGCCTTGCTGTAGTGTGAAGGACAGAATAGGCTACAGTATGATAACTGATGCCGAAGCCAAGGGTGCCATTAGCCCTGGCAAGAGCATTCTTGTAGAGCCAACTAGTGGGAATACAGGGATTGGTCTAGCATTTATTGCTGCAGCTAAGGGTTATAAACTTATCCTAACTATGCCGGCATCTATGAGTCTGGAACGGCGAGTACTGCTAAGAGCTTTTGGAGCAGAGCTTGTTCTCACAGAAGCTGCTAAGGGCATGAAGGGAGCTGTTCAGAAAGCTGAGGAAATTTTGAGTAAAACACCTAATGCATACATGCTTCAACAGTTTGACAATCCTGCAAATCCCAAGGTCCATTATGAGACCACTGGACCTGAAATTTGGGAAGACACAAAGGGGAAGGTTGACATTTTGGTTGCTGGGATAGGAACTGGAGGGACAGTTACTGGTGTTGGTCAATATTTAAAAGGCAAAAATCCAAATATCAAGGTTATTGGTGTGGAGCCAACTGAGAGCAACATACTGTCTGGGGGGAAACCAGGTCCCCACAAAATTCAAGGCATTGGTGCAGGATTTATTCCACGTAATTTGGATGTAGACATACTTGATGAGGTCATACAGGTATCTAGTGATGAAGCTGTTGAGATGGCAAAGCAATTGGCACTTCAGGAAGGCTTGATGGTTGGAATTTCATCGGGAGCTGCAGCAGCAGCAGCAATTGAAGTGGCAAAACGATCAGGGAACTCAGGGAAACTGATTGCAGTTGTATTTCCAAGTTTTGGTGAGCGATATCTGTCAACCGTTTTGTTCCAGTCCATACGGGAGGAATGCGAGAAGATGCAACCAGAACCATGA___TGTTTCCAAGGAGTAATTCTTATATGTGTCAGACTGCATTCCTCTGGATAATTTTTTGTTAGTAATGGTTGGTGGAAGGAAAAGCATTCTAAGAACAGTGGGCATTATCAGGAGTTCATAATAGAAAAATTAGGTGGGCATTCGTTCTTTGTTTAACAGATGATTTTTTTCTCTTATTTATGAACACAGTAATTGCAAGCTTACATTATGATAAGCTATTGTGAATCCTCGACCTTGGGCAGGTGCAAAATTTCCCAATAAATGACGCACGTCTTGTAATTAACAAACTATTTTTCTTAATCTTTATCTTGCATATGGTTTTTCCTTAGAC

Fln Alignment:

Contig1195___MMTMSIQTQFQSNTSVRLGLGVAEAAPISKRSPIVKGYPTYKPEARKQLRLKAAVCENGRKRFTTLCKAVSSVEPQIDVQPLNIAEDVTQLIGKTPMVYLNSVVKGCVANIAAKLEIMEPCCSVKDRIGYSMITDAEAKGAISPGKSILVEPTSGNTGIGLAFIAAAKGYKLILTMPASMSLERRVLLRAFGAELVLTEAAKGMKGAVQKAEEILSKTPNAYMLQQFDNPANPKVHYETTGPEIWEDTKGKVDILXXXXXXXXXXXXXXQYLKGKNPNIKVIGVEPTESNILSGGKPGPHKIQGIGAGFIPRNLDVDILDEVIQVSSDEAVEMAKQLALQEGLMVGISSGXXXXXXIEVAKRSGNSGKLIAVVFPSFGERYLSTVLFQSIREECEKMQPE
A9NS10_______________MMTMSMQAQFQSNTSVRLGLGVAEAASIPRASPIIKGYPIHKREARKRLGLKAAVGENGRKRFTTLCKTVSSVEPQTNVQPLNIAEDVTQLIGKTPMVYLNNVVKGCVANIAAKLEIMEPCCSVKDRIGYSMITDAEAKGAITPGKSILVEPTSGNTGIGLAFIAAAKGYKLILTMPASMSLERRVLLRAFGAELVLTEAAKGMKGAVQKAEEILNKTPNAYMLQQFDNPANPKVHYETTGPEIWEDTEGKVDIFVAGIGTGGTVTGVGRYLKGKNPNIKIIGVEPTESNILSGGKPGPHKIQGIGAGFIPRNLDVDILDEVIQISSDEAVEMAKQLALQEGLMVGISSGAAAAAAIEVAKRSGNSGKLIAVVFPSFGERYLSTVLFQSIREECEKMQPE

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
161		85	14		0.993533
162	14		85		0.993533
164	71	14		14	0.984337
166		14		85	0.993533
170		16	83		0.994512
171	83			16	0.994512
172	83			16	0.994512
173	83		16		0.994512
175	83	16			0.994512
176	83			16	0.994512
179	16			83	0.994512
180		16		83	0.994512
181			83	16	0.994512
182		16	83		0.994512
183	16		83		0.994512
185		16		83	0.994512
202	83		16		0.994512
371			14	85	0.993533
396		75		25	0.996473
485		20	80		0.995493
486	80		20		0.995493
487	80			20	0.995493
488	80	20			0.995493
490	80			20	0.995493
491		80	20		0.995493
496	80			20	0.995493
831		66		33	0.997452
1146		70	30		1.0
1147	70			30	1.0
1153	70	30			1.0
1154		30		70	1.0
1159	70	30			1.0
1160		15		84	0.999986
1164	76		7	15	0.999983
1165		23	76		1.0
1166	76			23	1.0
1168	84	15			0.999986
1170	84		15		0.999986
1174		15	84		0.999986
1177		15	84		0.999986
1307			83	16	0.999991
1310	83	16			0.999991
1313		83		16	0.999991
1314	83		16		0.999991
1316			83	16	0.999991
1318	83			16	0.999991
1319	83	16			0.999991
1324	12		87		0.999964
1326	75	25			1.0
1327			25	75	1.0
1330	25	75			1.0
1331	75	25			1.0
1332		25	75		1.0
1336			25	75	1.0
1337	75	25			1.0
1339			25	75	1.0
1345	81	18			1.0
1370	88			4	0.999262
1373	4		84	8	0.998474
1375	8		4	88	0.999262
1427	30			70	1.0
1489		23		76	1.0
1642		30		69	1.0
1682		80		20	0.999996

SSRs (tot: 1)

Start position	End position	Sequence	Length
1256	1270	GCA GCA GCA GCA GCA	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain