SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1188

Length: 1323 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1188

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1234	7/24
SustainPine v2.0	sp_v2.0_unigene20629	13/24

Source	Descriptions	Term	Type	Identity
AutoFact	Cationic amino acid transporter n=1 Tax=Populus trichocarpa RepID=B9IPU4_POPTR	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	59%
Blast2go	cationic amino acid transporter	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Catalase.	EC:1.11.1.6	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Tryptophan metabolism	00380	83%
Blast2go	Methane metabolism	00680	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	photoperiodism	GO:0009648	Biological Process	83%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	83%
Blast2go	transport	GO:0006810	Biological Process	83%
Blast2go	cell death	GO:0008219	Biological Process	83%
Blast2go	response to cold	GO:0009409	Biological Process	83%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	83%
Blast2go	cellular response to sulfate starvation	GO:0009970	Biological Process	83%
Blast2go	cellular response to nitrogen starvation	GO:0006995	Biological Process	83%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	83%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	83%
Blast2go	catalase activity	GO:0004096	Molecular Function	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	peroxisome	GO:0005777	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	83%
Blast2go	stromule	GO:0010319	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Cationic amino acid transporter	IPR015606	-	-
Sma3		IPR015706	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: F6HMP9

Fln msg: Separated hits, possible frame ERROR between 392 and 407, Distance to subject end: 255 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 381 - 639

Fln protein: MGFFGVESQGLCGLRSMFRRKRVDSAHSKSQAGQLAKHLSVFQLIPIGVGSTIGAGVYVLVGTVAREPS*xxxxxxFLIAGIAAALSAFCYAELASRCPSAGSAYHYSYICVGEGIAWLIGWALILEYTVGGSAVARGISPNLAVFFGGEDNLPTFLVRRHIHGTDITVDPCAAILVMFVVGLLCVGIKESALVQSLVTFANVCVMLFVIIAGSVIGFWTGWAGYELSNGYFPYGINGMLGGAATVFFAYIGFDTVASTAEEVKNATA*FASRHWPFSFHM*WTIHVGVCCYCGHCTILFNGPRHPNFICFCRPWYALGHVYCHSWRSGCPFIYTDGLTSPSA*NLDGNG*RWIAALIFSKLNEKTSVPVNSTLVSGFVAA

Protein Length: 382

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTATTTTCCCCCTGAGATTCAGCGGTTATTTGCAATTCAATTCTCTCCTGAGGGAGCGAGGGAGGGAAGAACAGAGCTTCTTCCCTGCTGTTCTCTTCGCACTCCTTTTAAATGAGTCAGCAGAAGAGGGTGCTTTAGTTAGATTGAATACAC_-_ATGGGGTTCTTCGGGGTCGAATCTCAGGGCCTTTGTGGGTTGCGGAGCATGTTCAGAAGAAAACGGGTTGATTCTGCTCATAGTAAATCTCAGGCAGGCCAGCTTGCCAAGCATCTCTCCGTGTTTCAGCTAATCCCCATTGGTGTTGGTTCAACTATAGGAGCTGGTGTCTATGTCCTTGTTGGCACAGTTGCCAGGGAGCCGTCGTGACCxxxxxxxxxxxxxxxATTTCTTATAGCTGGAATAGCTGCTGCACTTTCAGCATTTTGTTATGCTGAACTTGCAAGTCGTTGTCCATCCGCAGGCAGCGCATATCATTATTCATACATCTGTGTTGGAGAAGGGATTGCTTGGCTGATTGGTTGGGCACTTATTTTGGAGTATACAGTAGGTGGATCTGCTGTTGCCCGTGGTATCTCTCCCAATCTGGCTGTATTCTTTGGGGGAGAAGATAATCTGCCCACATTTTTAGTTCGTCGACATATTCATGGCACTGATATCACAGTTGACCCTTGTGCTGCAATTCTTGTCATGTTTGTTGTTGGTCTCCTTTGTGTGGGAATCAAAGAGAGTGCATTGGTGCAATCCCTTGTCACATTTGCAAATGTATGTGTCATGTTGTTCGTCATTATAGCTGGAAGTGTTATTGGTTTTTGGACTGGTTGGGCTGGATATGAGCTGTCCAATGGGTATTTCCCATATGGAATCAATGGGATGCTTGGTGGTGCTGCAACAGTTTTCTTTGCATACATTGGATTTGATACAGTTGCGAGTACTGCTGAAGAGGTCAAAAATGCCACAGCGTGATTTGCCTCTAGGCATTGGCCTTTCTCTTTTCATATGTAGTGGACTATACATGTTGGTGTCTGCTGTTATTGTGGGCATTGTACCATACTATTCAATGGACCCAGACACCCCAATTTCATCTGCTTTTGCAGACCATGGTATGCATTGGGCCATGTATATTGTCACAGCTGGCGCAGTGGCTGCCCTTTCATCTACACTGATGGGCTCACTTCTCCCTCAGCCTAGAATCTTGATGGCAATGGCTAGAGATGGATTGCTGCCCTCATTTTCTCCAAACTCAATGAAAAAACTTCAGTTCCAGTTAATAGCACATTAGTGTCTGGATTTGTTGCTGCCCT

Fln Alignment:

Contig1188___GFFGVESQGLCGLRSMFRRKRVDSAHSKSQAG-QLAKHLSVFQLIPIGVGSTIGAGVYVLVGTVAREPS*PxxxxxFLIAGIAAALSAFCYAELASRCPSAGSAYHYSYICVGEGIAWLIGWALILEYTVGGSAVARGISPNLAVFFGGEDNLPTFLVRRHIHGTDITVDPCAAILVMFVVGLLCVGIKESALVQSLVTFANVCVMLFVIIAGSVIGFWTGWAGYELSNGYFPYGINGMLGGAATVFFAYIGFDTVASTAEEVKN
F6HMP9_______________GDFDSQKRGSRGFKGLMRRKLVDSARKEVDGGHKLAKELSVTHLIAIGVGSTIGAGVYILVGTVAREHSGPxxxxxFLIAGIAAALSAFCYAELSSRCPSAGSAYHYSYICVGESVAWLIGWALILEYTVGGSAVARGISPNLALLFGGGD-LPAFIARQYIPALDIVVDPCAAILVFIVTGLLCVGIKESTVAQAIVTTGNVCAMMFVVIAGGYLGFKTGWAGYELPTGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKN

SNPs (tot: 82)

Position	A %	C %	G %	T %	Probability
382	16	83			0.994512
383			83	16	0.994512
386	16		83		0.994512
387			16	83	0.994512
392	16			83	0.994512
393			16	83	0.994512
394		16	83		0.994512
395		16	83		0.994512
398			83	16	0.994512
399	16			83	0.994512
402	16	83			0.994512
405	83	16			0.994512
564		75		25	0.996473
662	80	20			0.995493
663			20	80	0.995493
666	80		20		0.995493
669	20		80		0.995493
671	80	20			0.995493
672		80		20	0.995493
676	80	20			0.995493
678	80		20		0.995493
684	80	20			0.995493
685	20		80		0.995493
694		16		83	0.994512
697		16	83		0.994512
698		83	16		0.994512
702	83	16			0.994512
703	83			16	0.994512
705			16	83	0.994512
706		83	16		0.994512
707		16		83	0.994512
714		16	83		0.994512
716		16		83	0.994512
717	16			83	0.994512
836		33		66	0.997452
903		25	75		0.996473
906		25	75		0.996473
912		25		75	0.996473
913			75	25	0.996473
914		75		25	0.996473
915	75		25		0.996473
916	75		25		0.996473
918	66			33	0.997452
922	33			66	0.997452
923		33		66	0.997452
965		40		60	1.0
967	60			40	1.0
968	60	40			1.0
970	60			40	1.0
972	40		60		1.0
973		40		60	1.0
975	60			40	1.0
976	60			40	1.0
977	60		40		1.0
978	60		40		1.0
979	60	40			1.0
982		60		40	1.0
986	60			20	0.99255
987		20	60	20	0.99255
988	20	80			0.995493
990	20			80	0.995493
992	80		20		0.995493
1024	83		16		0.994512
1026	83		16		0.994512
1029	16			83	0.994512
1030	83	16			0.994512
1031		16	83		0.994512
1033			83	16	0.994512
1035	83		16		0.994512
1038	83		16		0.994512
1044		16	83		0.994512
1046		16		83	0.994512
1047	16		83		0.994512
1127	87		12		0.992554
1129		12	87		0.992554
1133			12	87	0.992554
1134	12		87		0.992554
1136	87	12			0.992554
1142		87		12	0.992554
1146		12	87		0.992554
1148	87	12			0.992554
1149	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain