SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1169

Length: 700 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1169

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36022	10/12
SustainPine v2.0	sp_v2.0_unigene36296	1/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] ref\|NP_001190331.1\| protein kinase family protein [Arabidopsis thaliana] gb\|ABE66165.1\| protein kinase family protein [Arabidopsis thaliana] gb\|AED92585.1\| protein kinase family protein [Arabidopsis tha	-	-	1.0e-18	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	protein kinase-like protein	-	-	1.54072e-26	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.54072e-26	64%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
22			33	33	0.997753
25	33		66		1.0
26	25			75	0.996473
27	25		50	25	1.0
28	75		25		0.996473
29		25	25	50	1.0
31	25			75	0.996473
34	25		50	25	0.995533
40	25		75		0.996473
42		20		60	0.99255
43	20		80		0.995493
45	20	80			0.995493
46	80		20		0.995493
47		80		20	0.995493
48			40	60	1.0
49	20	80			0.995493
50	60	40			1.0
51		40	60		1.0
52		20		80	0.995493
53		40		60	1.0
54		80	20		0.995493
55			25	25	0.995533
271		16		83	0.994512
272			16	83	0.994512
274	66	16			0.988813
277			16	83	0.994512
279	83	16			0.994512
283		16		83	0.994512
288	83	16			0.994512
290	16		83		0.994512
440		66		33	0.997452
441		33		66	0.997452
443	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain