SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1139

Length: 433 nt

UniGene Fasta

>uagpf_v2_unigene1139
CGTCGTGACCTTGGCTGTCACTCAGGTGGGTAAGTGAAGAGGAGGACAGAATCGACAGTGAAAATGAAGATACTCTGCAGTATGTCATATTAGACATGACTGCTGTGACAACTATTGACACAACAGGGGTCAATATTGTTGTGGAGGTCAAGAAAACATTGGAGAAGAGAGGATTACAGGTTGCCATGGTGAATCCTGGGGCGGGAGTAATGGAAAAACTGCGGAGAGCAAATTTAATTGAAAGCCTGGGACAGGACTGCTTGTATCTGACTGTAGGGGAAGCTGTTACTTCGTATTCGTCAACGATGAAAGAGCAAGTTTAATGGTGTGTATCCGTTCGGAGCAAAATGGTTCTGACAGCTTAAAATTCAAGCGGCCTTGCAGACTACTGACATGCAATAATGTGTGTATGGAGACTCCATTGCAATGCACG

Ace file of the UniGene uagpf_v2_unigene1139

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene713	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfate transporter, putative n=1 Tax=Ricinus communis RepID=B9SQC2_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	sulfate transporter	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	sulfate transport	GO:0008272	Biological Process	82%
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	secondary active sulfate transmembrane transporter activity	GO:0008271	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Sulphate anion transporter	IPR001902	-	-
Sma3	Sulphate transporter/antisigma-factor antagonist STAS	IPR002645	-	-
Sma3		IPR002917	-	-
Sma3	tRNA modification GTPase TrmE	IPR004520	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR005289	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Sulphate anion transporter, conserved site	IPR018045	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	GTP-binding protein TrmE, N-terminal	IPR018948	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVQ1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 107 - 491

Fln protein: S*PWLSLRWVSEEEDRIDSENEDTLQYVILDMTAVTTIDTTGVNIVVEVKKTLEKRGLQVAMVNPGAGVMEKLRRANLIESLGQDCLYLTVGEAVTSYSSTMKEQV*

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGGGTAAGTGAAGAGGAGGACAGAATCGACAGTGAAAATGAAGATACTCTGCAGTATGTCATATTAGACATGACTGCTGTGACAACTATTGACACAACAGGGGTCAATATTGTTGTGGAGGTCAAGAAAACATTGGAGAAGAGAGGATTACAGGTTGCCATGGTGAATCCTGGGGCGGGAGTAATGGAAAAACTGCGGAGAGCAAATTTAATTGAAAGCCTGGGACAGGACTGCTTGTATCTGACTGTAGGGGAAGCTGTTACTTCGTATTCGTCAACGATGAAAGAGCAAGTTTAA___TGGTGTGTATCCGTTCGGAGCAAAATGGTTCTGACAGCTTAAAATTCAAGCGGCCTTGCAGACTACTGACATGCAATAATGTGTGTATGGAGACTCCATTGCAATGCACG

Fln Alignment:

Contig1139___LRWVSEEEDRIDSENEDTLQYVILDMTAVTTIDTTGVNIVVEVKKTLEKRGLQVAMVNPGAGVMEKLRRANLIESLGQDCLYLTVGEAVTSYSSTMKEQV
A9NVQ1_______________MRWVSEEEDRIESENDDTLQYVILDLTAVTTIDTTGVNIVVEVKKTLEKRGLQVAMVNPGAGVMEKLRRADLIQNLGQDCLYLTVGEAVSSRSSAFKEQV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
33	66	33			0.997452
39	66	33			0.997452
40			66	33	0.997452
41	66			33	0.997452
45	66			33	0.997452
48		33	66		0.997452
51	66			33	0.997452
52		33	66		0.997452
117	83	16			0.994512
118			16	83	0.994512
123	83			16	0.994512
124		83		16	0.994512
125	83		16		0.994512
126	83		16		0.994512
128	83			16	0.994512
130		16	83		0.994512
131	16		83		0.994512
132		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain