SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1120

Length: 1360 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1120

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5109	23/26

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cornichon [Medicago truncatula]	-	-	1.0e-25	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	protein	-	-	9.13979e-40	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	9.13979e-40	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	9.13979e-40	76%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	9.13979e-40	76%

Source	InterPros	Term	Type	Identity
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Cornichon	IPR003377	-	-
Sma3	DNA/pantothenate metabolism flavoprotein, C-terminal	IPR007085	-	-

Full-Lengther Next Prediction

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
239		80	20		0.995493
240	80			20	0.995493
241	80	20			0.995493
242	80		20		0.995493
244			20	80	0.995493
245	20			80	0.995493
247	80	20			0.995493
251	60		20		0.99255
252	80		20		0.995493
253		25		75	0.996473
255			25	75	0.996473
258	75	25			0.996473
260		25	75		0.996473
262		25	75		0.996473
263	25	75			0.996473
404			25	75	0.996473
407	75		25		0.996473
409		75	25		0.996473
421			25	75	0.996473
423	75	25			0.996473
436		16	83		0.994512
438		16		16	0.988813
440			16	83	0.994512
441	50	16	16		0.988986
442	83			16	0.994512
443	66	16	16		0.988813
444		16		83	0.994512
445	66			16	0.988813
446		16		83	0.994512
447	16		83		0.994512
448		83	16		0.994512
449		16		83	0.994512
450		16		83	0.994512
451	16		83		0.994512
453		16	83		0.994512
455		16		83	0.994512
538		80	20		0.995493
540		20		80	0.995493
541	80		20		0.995493
544	20			80	0.995493
545	80	20			0.995493
548	80			20	0.995493
549		80	20		0.995493
550		80	20		0.995493
551	80	20			0.995493
557	80	20			0.995493
618		14		85	0.993533
620	85			14	0.993533
621		28	71		1.0
622	57	14	14		0.979185
623	71			28	1.0
624	71		14	14	0.984337
625	85		14		0.993533
626	71	14	14		0.984337
627	71	28			1.0
629	66		16		0.988813
631		85	14		0.993533
632	14		85		0.993533
634	71		14		0.984337
636		28	71		1.0
686	70			30	1.0
689		33	66		1.0
690			66	33	1.0
691	66	33			1.0
692	33			66	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain