SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1115

Length: 1123 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene1115

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5950	31/37

Source	Descriptions	Term	Type	Identity
AutoFact	growth-on protein GRO10 [Euphorbia esula]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	signal peptide peptidase-like 2b-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	80%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	80%
Blast2go	endosome	GO:0005768	Cellular Component	80%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Peptidase A22, presenilin signal peptide	IPR006639	-	-
Sma3	Peptidase A22B, signal peptide peptidase	IPR007369	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9U6

Fln msg: your sequence is shorter than subject: 232 - 537

Fln protein: VVTLAVTQPFCGAVSVLTLAVVPFCITFAVVWAVYRRNSFAWIGQDILGITLIITVLQIVRLPNVKVSTVLLGCAFLYDIFWVFVSHKLFHESVMIVVARGDRSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKTLQGGYFLWSMIGYGFGLFITYVALNLMDGNGQPALLYIVPCTLGTVITLGWLRGELSNLWSEGEPRMPCPHIGLKVGT*

Protein Length: 233

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCTTTCTGTGGAGCTGTTTCCGTCTTGACTTTGGCTGTCGTGCCATTTTGTATAACATTTGCTGTTGTATGGGCTGTTTATCGACGTAACTCATTTGCTTGGATTGGTCAAGATATACTCGGCATCACTTTGATCATAACTGTTCTTCAAATTGTACGGCTTCCTAATGTGAAGGTATCTACAGTTCTTCTAGGTTGTGCCTTTCTGTATGACATCTTTTGGGTGTTTGTTTCACATAAACTATTCCACGAAAGTGTGATGATTGTGGTTGCTCGTGGTGATAGAAGTGGAGAGGACGGCATACCCATGCTACTGAAAATTCCACGTTTGTATGATCCATGGGGTGGTTACAGCATCATTGGCTTTGGAGACATACTTTTACCAGGACTGCTGATAGCCTTTGCTTTAAGATATGATTGGGCAGCTAAGAAGACTTTGCAAGGAGGCTATTTTCTGTGGTCCATGATTGGCTATGGCTTTGGGCTGTTCATTACATATGTTGCTCTGAATCTGATGGATGGAAATGGACAACCTGCTCTTCTGTATATTGTTCCTTGTACCCTTGGCACTGTTATAACCTTGGGATGGTTGCGTGGTGAACTAAGTAATTTATGGTCAGAGGGAGAGCCTCGAATGCCTTGCCCACATATTGGACTCAAGGTTGGCACATGA___GTTCAGGGATGATGTTCTTTGCAGAGATTTATGGTCAAAGGCAGAGCCTCAAATGCCTTGCTCACATATTGGACCTAAGGTTGGCTCATGAGTTCAGGGATGGTTTTCTTTGCAGAGAATTTTCCTGCTTGAGTTGCATTCAAATCTGTACATTTTATCTTTACATTAATTTTATCAAATGCAATGCTAAGCATTAGCCAAGCTTGGATGCTCATGTCCTACTATTATCTGGTTCCTGCAGACAGTAACTTTTAGAATGTGGCATTACCATCTAAGGAATATTAGTGCTGATTATATGCATGATAAGTTTACTTTAACCTACAAAATGCTCAAAAGCAGACTTTATCAGTCTAGTGAAAAGCATTTCTGATCTTTATTGAGAATTCTTTTTATACCTGCATGAAATTGTACAGAGAAAGGAGTCCA

Fln Alignment:

Contig1115___PFCGAVSVLTLAVVPFCITFAVVWAVYRRNSFAWIGQDILGITLIITVLQIVRLPNVKVSTVLLGCAFLYDIFWVFVSHKLFHESVMIVVARGDRSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKTLQGGYFLWSMIGYGFGLFITYVALNLMDGNGQPALLYIVPCTLGTVITLGWLRGELSNLWSEGEPRMPCPHIGLKVGT
D5A9U6_______________PFFGAVSALTLAVLPFCITFAVVWAVYRRISFAWIGQDILGITLIITVLQIVRLPNVKVSAVLLSCAFLYDIFWVFVSPKLFHESVMIVVARGDKSGEDGIPMLLKIPRLYDPWGGYSIIGFGDILLPGLLIAFALRYDWAAKKSLQGGYFLWSMIGYGFGLFMTYVALNLMDGNGQPALLYIVPCTLGTVLTLGWLRGELSNLWSKGEPQMPCPHVGPKVGT

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
93		25		75	0.996473
97	75		25		0.996473
100	25		75		0.996473
101		25	75		0.996473
106			25	75	0.996473
107		25		75	0.996473
109	75		25		0.996473
117	75	25			0.996473
143		25		75	0.996473
456			20	80	0.995493
457	80			20	0.995493
458	80	20			0.995493
461	80			20	0.995493
468			20	80	0.995493
471	80			20	0.995493
472	80		20		0.995493
473			80	20	0.995493
474		20	80		0.995493
476		25	75		0.996473
477			75	25	0.996473
500		16	83		0.994512
502		83		16	0.994512
503		16		83	0.994512
504	83		16		0.994512
507	20		80		0.995493
509		20		80	0.995493
522		20		80	0.995493
524	80	20			0.995493
525	20	80			0.995493
671		14		85	0.993533
673		85		14	0.993533
675		85	14		0.993533
676	85			14	0.993533
677		85	14		0.993533
679		14		85	0.993533
680	85	14			0.993533
685	85			14	0.993533
686		85	14		0.993533
690	85			14	0.993533
691		14	85		0.993533
692	14		85		0.993533
695			85	14	0.993533
748	83	16			0.994512
751		83	16		0.994512
753		83	16		0.994512
755	83	16			0.994512
756	83			16	0.994512
759		83	16		0.994512
763	16		83		0.994512
778		80	20		0.999996
780	60	10	20	10	0.999999
781	90		10		0.90298
782		20	80		0.999996
783		30	70		1.0
786		10	90		0.90298
787	10		90		0.90298
791	80		20		0.999996
793		20	80		0.999996
796		10		90	0.90298
797		10		90	0.90298
798	10	90			0.90298
916		86		13	0.999973
970	54			45	1.0
1015		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain