SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene1103

Length: 337 nt

UniGene Fasta

>uagpf_v2_unigene1103
CGTCGTGACCTTGGCTGTCACTCAATTTTTTCATACCTGTTTTTTTATCTGTTACACAGATATGCGTTTCTGGTGAAATTATACGGACCATCCTCTTTCTCAGCATATAACAGAAGGAAAAGGACGGACCGTTGCACGACAATGGCGGAGAACAAGAATAAATATGATCGGCAGCTAAGGATATGGGGTGAACAGGGACAAGCTGCTCTGGAGAGAGCGAGCATTTGCTTGTTGAACTGTGGCCCCACCGGCTCAGAAGCATTGAAAAATCTCGTTTTGGGAGGCATAGGAAGTTTCACAGTTGTTGATGGCTCCAAAGTGGAAGTAGCAGATCTAG

Ace file of the UniGene uagpf_v2_unigene1103

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene101	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	amyloid beta precursor protein binding protein 1 [Arabidopsis thaliana] sp\|P42744.1\|ULA1_ARATH RecName: Full=NEDD8-activating enzyme E1 regulatory subunit; AltName: Full=Auxin-resistance protein AXR1 gb\|AAB59348.1\| ubiquitin-activating enzyme E1 [Arabidop	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	nedd8-activating enzyme e1 regulatory subunit	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	82%
Blast2go	response to water deprivation	GO:0009414	Biological Process	82%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	82%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	82%
Blast2go	post-embryonic development	GO:0009791	Biological Process	82%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	82%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	82%
Blast2go	small protein activating enzyme activity	GO:0008641	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	peroxisome	GO:0005777	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9L0

Fln msg: Distance to subject end: 245 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 65 - 316

Fln protein: MAENKNKYDRQLRIWGEQGQAALERASICLLNCGPTGSEALKNLVLGGIGSFTVVDGSKVEVADL

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTCATACCTGTTTTTTTATCTGTTACACAGATATGCGTTTCTGGTGAAATTATACGGACCATCCTCTTTCTCAGCATATAACAGAAGGAAAAGGACGGACCGTTGCACGACA_-_ATGGCGGAGAACAAGAATAAATATGATCGGCAGCTAAGGATATGGGGTGAACAGGGACAAGCTGCTCTGGAGAGAGCGAGCATTTGCTTGTTGAACTGTGGCCCCACCGGCTCAGAAGCATTGAAAAATCTCGTTTTGGGAGGCATAGGAAGTTTCACAGTTGTTGATGGCTCCAAAGTGGAAGTAGCAGATCTAG

Fln Alignment:

Contig1103___YDRQLRIWGEQGQAALERASICLLNCGPTGSEALKNLVLGGIGSFTVVDGSKV
D5A9L0_______________YDRQIRVWGVDAQRRLSKSRVLVIGMTGVVAELCKNIVLAGIGNLTLMDDSPV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
54		33		66	1.0
79	66			33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain