SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene950

Length: 398 nt

UniGene Fasta

>uagpf_v2_unigene950
CGTCGTGACCTTGGCTGTCACTCATTTCTGGCGTTGGAGGTTGGCTGTATCTTTGGACCGTTTGGGAATAACTCTTAAATATGTTGTATCAGCAGAAATCTGCAAAGAAAACAGGCTTATCCTCAAAAGCTGGTGGGAAAAAACAGAACAGAAAGGTAAATTAATTGAGCTGGAAGATGTTCAGAACCTAGCAGAGGATGAGCTTGAAAATCTAATTGATACGGTTGGAGGCTTTGATCTTATTATTGGTGGAAGTCCCTGTAATAATTTGACGGGCAGCAACAGGCGGACAAGAGATGGGTTGGATGGGAAGCATTCCTCACTTTTCTTTGAATTTTCACGCATTGTAAATATTGTGAGACATCTAATGCGTTCGAAAGGAATGCTAAAAAAATCTG

Ace file of the UniGene uagpf_v2_unigene950

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13179	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Domains rearranged methyltransferase n=3 Tax=Nicotiana RepID=B1GYI2_NICSY	-	-	64%
FL-Next	sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	domains rearranged methyltransferase	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	DNA methylation	GO:0006306	Biological Process	78%
Blast2go	histone H3-K9 methylation	GO:0051567	Biological Process	78%
Blast2go	gene silencing	GO:0016458	Biological Process	78%
Blast2go	DNA binding	GO:0003677	Molecular Function	78%
Blast2go	N-methyltransferase activity	GO:0008170	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	YTH domain	IPR007275	-	-
Sma3	Stress responsive alpha-beta barrel	IPR013097	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9M548

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 132 - 626

Fln protein: VVTLAVTHFWRWRLAVSLDRLGITLKYVVSAEICKENRLILKSWWEKTEQKGKLIELEDVQNLAEDELENLIDTVGGFDLIIGGSPCNNLTGSNRRTRDGLDGKHSSLFFEFSRIVNIVRHLMRSKGMLKKS

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTGGCGTTGGAGGTTGGCTGTATCTTTGGACCGTTTGGGAATAACTCTTAAATATGTTGTATCAGCAGAAATCTGCAAAGAAAACAGGCTTATCCTCAAAAGCTGGTGGGAAAAAACAGAACAGAAAGGTAAATTAATTGAGCTGGAAGATGTTCAGAACCTAGCAGAGGATGAGCTTGAAAATCTAATTGATACGGTTGGAGGCTTTGATCTTATTATTGGTGGAAGTCCCTGTAATAATTTGACGGGCAGCAACAGGCGGACAAGAGATGGGTTGGATGGGAAGCATTCCTCACTTTTCTTTGAATTTTCACGCATTGTAAATATTGTGAGACATCTAATGCGTTCGAAAGGAATGCTAAAAAAATCTG

Fln Alignment:

Contig950___VSLDRLGITLKYVVSAEICKENRLILKSWWEKTEQKGKLIELEDVQNLAEDELENLIDTVGGFDLIIGGSPCNNLTGSNRRTRDGLDGKHSSLFFEFSRIVNIVRHLMR
Q9M548______________VALHRLQIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNRVSRVGLEGDQSSLFFEYCRILEVVRARMR

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
67			33	66	0.997452
70	33		66		0.997452
71		33	66		0.997452
72	66	33			0.997452
73	66			33	0.997452
75	66		33		0.997452
76	66		33		0.997452
79		66	33		0.997452
81		33		66	0.997452
83	66	33			0.997452
84	66			33	0.997452
85		33		66	0.997452
183		16		83	0.994512
186		16		83	0.994512
187		83	16		0.994512
188	83			16	0.994512
191	83	16			0.994512
193		83		16	0.994512
195	83		16		0.994512
198	83			16	0.994512
200	83			16	0.994512
201		16	83		0.994512
202	16		83		0.994512
203	83	16			0.994512
205	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain