SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene914

Length: 1524 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene914

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18512	75/77

Source	Descriptions	Term	Type	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] ref\|NP_974396.1\| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] emb\|CAB61981.1\| putative protein [Arabidopsis thaliana] dbj\|BAE98651.1\| hypothetical protein [Arabidop	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	ring fyve phd zinc finger-containing protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMM9

Fln msg:

Fln protein: MSDHLVLYVDRLITPSTFDTHVEIGSPSASEKSEAPNLKEEELPLISDGSPSQSTFDQSGCDDVVDAFKLGECRICQEEDEEKNMESPCACSGSLKFAHRKCVQRWCNEKGSIICEICHQPYSPGYTAPPQPAHSDDTPIDLSNRRDLGPQAQLDLHDPRLLAMAAAERHFLEAEYDEYAAANASGAAFCRSAALILMALLLLRHALVINNPDGDDDSSAYLSLFFLRAAGFLLPCYIMAWAVSILQRRRQRQEATMAATEVALLLRAGQGRGIHYAVTPVTSSRQELP*

Protein Length: 291

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGAAATGCAATTAATCAATGGCAGATTCAATTGGATTGAGACCAGTTGAATTGCAGGGTTGCTAGTCTCCTTCGAGATCGGGAATTCTTTCCTCAATTTGAGCTCTGTTTATTGCTGTGAATCACTGAATTAGGGTTAAGAGAGGCTTCTGTTAGGAAAAAAGGGTTCTGTAAAGCGTTTGACCCCAGAGGTTCCCTTTACCCCATTCAAAGTAGGACAATTTTTTTTCACC_-_ATGTCGGATCATCTGGTATTGTATGTCGACCGTCTGATAACTCCTTCGACCTTCGACACCCATGTCGAGATTGGGTCCCCATCGGCGTCTGAGAAAAGCGAGGCTCCGAACTTGAAAGAGGAAGAATTGCCCCTGATTTCAGATGGGTCTCCTTCTCAATCTACTTTTGATCAATCTGGATGTGACGATGTTGTTGACGCGTTTAAATTGGGTGAATGCCGCATCTGCCAAGAGGAAGACGAGGAGAAGAACATGGAGAGCCCCTGTGCCTGCAGCGGCAGTCTAAAGTTTGCACATCGAAAATGCGTACAGCGATGGTGCAATGAGAAGGGAAGTATTATATGTGAGATATGCCATCAGCCATATAGTCCTGGTTACACGGCCCCTCCTCAGCCAGCACATTCTGATGACACTCCCATTGATTTGAGTAACCGTCGTGACCTTGGCCCTCAAGCACAGTTAGACCTGCATGATCCTCGGTTGTTAGCAATGGCTGCTGCAGAGCGTCATTTTTTGGAAGCAGAATATGATGAATATGCGGCAGCTAATGCAAGTGGTGCTGCATTCTGCCGTTCAGCCGCATTGATTCTCATGGCACTTCTACTTCTACGACATGCTCTTGTTATAAATAATCCTGATGGAGACGATGATTCTTCAGCATATTTATCTCTTTTTTTCCTGAGAGCTGCTGGATTTCTCTTGCCGTGTTATATCATGGCATGGGCAGTAAGCATTTTGCAGCGCCGGAGGCAGAGACAGGAGGCAACTATGGCAGCTACTGAAGTTGCGCTTCTTCTGCGAGCAGGACAAGGTCGAGGAATACATTATGCAGTAACTCCCGTGACTTCATCTCGTCAGGAGTTGCCTTAA___CACTGACAGGTGTACAAATCAACAACAGCCAATTTGTTTGATAATCATAATTGCTTTTTGAAAGAATCCTGGTAGATCAAAGACTAACAGATCAGCTATGGATAAGGTTGCAATAGGTACAGTGAATTTTGAACTGGCGATCTAAGAAAGTTGTCGATTAAAGCTTACCATTGGAAAATCAAGTTCATTTGTTTGTAGTCTAATTGTGATTTAGCATTGGCTACCTGACAGTTGTGGTAAAAGAGGATAAGGAATGACTTTCTTATGCTTGTTATGGTATACTATTATTACTTAAGAAGGTATCATCAGAAAGTAGTAAAGATAGGCAGGCAGTCCTGTGTAAATATTCTTTTTAGAAATTGGTTGCTACTTAGTTTCATTGTCTATCAAGTTTAC

Fln Alignment:

Contig914___MSDHLVLYVDRLITPSTFDTHVEIGSPSASEKSEAPNLKEEELPLISDGSPSQSTFDQSGCDDVVDAFKLGECRICQEEDEEKNMESPCACSGSLKFAHRKCVQRWCNEKGSIICEICHQPYSPGYTAPPQPAHSDDTPIDLSNRRDLGPQAQLDLHDPRLLAMAAAERHFLXXXXXXXXXXXXSGAAFCRSXXXXXXXXXXXXXXXVINNPDGDDDSSAYLSLFFLRAAGFLLPCYIMAWAVSILQRRRQRQEATMAATEVALLLRAGQGRGIHYAVTPVTSSRQELP
B8LMM9______________MSDHLVLYVDRLITPSTFDTHVEIGSQSASDKSEASSLKDEELPLISDGPP-QSTFDLSGCDDGGAAFKLGECRICQEEDEEKNMETPCACSGSLKFAHRKCVQRWCNEKGSIICEICHQPYSPGYTAPPQPAHSDDTAIDLSGSWGV-PGAQLDLHDPRLLAMAAAERHFLEAEYDEYAAANASGAAFCRSAALILMALLLLRHALVINNPDGDDDSSAYLSLFFLRAAGFLLPCYIMAWAVSILQRRRQRQEATMAATEVALLLRAGQGRGMHYAVTPVSSSRQELP

SNPs (tot: 121)

Position	A %	C %	G %	T %	Probability
16		40		60	1.0
18			40	60	1.0
20	80	20			0.995493
21		60	40		1.0
22		40		60	1.0
24	60			40	1.0
102		16	83		0.994512
103	83		16		0.994512
107			83	16	0.994512
110	83	16			0.994512
115		33	16	50	1.0
177		14	85		0.993533
178			14	85	0.993533
180	85	14			0.993533
182			85	14	0.993533
183	85		14		0.993533
185	85	14			0.993533
186	85	14			0.993533
187	85			14	0.993533
188	85			14	0.993533
191		14	85		0.993533
195	14			85	0.993533
196		14	85		0.993533
198	85	14			0.993533
214			57	42	1.0
228		80	20		0.995493
229	20	60		20	0.99255
231	80		20		0.995493
233	20			80	0.995493
235	80	20			0.995493
236	80			20	0.995493
237	80			20	0.995493
239			20	80	0.995493
240	80	20			0.995493
241			80	20	0.995493
243	80			20	0.995493
246	80	20			0.995493
249	25			75	0.996473
301			14	85	0.993533
302		85		14	0.993533
304			14	85	0.993533
315	85			14	0.993533
320	14	85			0.993533
393		14		85	0.993533
395	85			14	0.993533
396		14		85	0.993533
397			14	85	0.993533
399		85	14		0.993533
401		14	85		0.993533
402	85	14			0.993533
404			85	14	0.993533
410		85	14		0.993533
411		85		14	0.993533
412		14		85	0.993533
413	14			85	0.993533
525		83	16		0.994512
534		83		16	0.994512
535	83		16		0.994512
539			83	16	0.994512
542		16	83		0.994512
545	16			83	0.994512
591	25		50		0.995533
632		75	25		0.996473
634		25	75		0.996473
637			25	75	0.996473
640	75	25			0.996473
641		75		25	0.996473
642			75	25	0.996473
644		75	25		0.996473
646		75		25	0.996473
647		75	25		0.996473
653	80	20			0.995493
655		80		20	0.995493
657	80		20		0.995493
658			80	20	0.995493
659		80	20		0.995493
662	80	20			0.995493
666			20	80	0.995493
668	80	20			0.995493
671	80			20	0.995493
678	20	80			0.995493
719	83	16			0.994512
722			16	83	0.994512
723	83			16	0.994512
730		83	16		0.994512
731	83	16			0.994512
835		20		80	0.995493
836		80	20		0.995493
837	80			20	0.995493
839	20	80			0.995493
843	80			20	0.995493
845			20	80	0.995493
847	80	20			0.995493
898		12	87		0.992554
899	87		12		0.992554
901		12	87		0.992554
903	87			12	0.992554
907		12	87		0.992554
908	87			12	0.992554
911	87	12			0.992554
915		12		87	0.992554
974	87		12		0.999964
1056			11	83	0.999887
1061		88		11	0.999937
1064		11	88		0.999937
1066	88			11	0.999937
1067			88	11	0.999937
1069	88		11		0.999937
1073			88	11	0.999937
1077		11	88		0.999937
1093	90	10			0.999898
1100		90	10		0.999898
1102		55		45	1.0
1159	86		13		0.999973
1160			86	13	0.999973
1162		86	13		0.999973
1164	86	13			0.999973
1170			14	85	0.999981
1172		14	85		0.999981
1471	20			80	0.995493
1476	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain