SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene873

Length: 2196 nt

UniGene Fasta

>uagpf_v2_unigene873
CGTCGTGACCTTGGCTGTCACTCAGTCGTTCTAGGGCGACGACTCCCCAATTGACCTCACCCTCTAGCGGCAGCCATTGGAAAAGGGTCGACCTTGGCTGTTATTTATTTGGTAGGAACAAACGCTGGGCCACAAAACTTCCACTCAGAAGATAACAGGCCATAGCTACCCTCCAAACTGCCATAATCTTTGATTATTTATTCGCCATTCGAAATTACAACAACAACAATATCCTGAGTGTGTATTCTGAGATCCATTCATCCATCTATCCATGGCAGCAATGGCAGGGAGATGGAGAGGCCAATTGGCTCTGATCCACAAAGCCTTGAGACCCACTTCTTCTTCCGAGGGTTTGGGAAGATGTGTGGGAGCTCTACGAACATATTCATCATCATCAACCGAAGAGAATGATGTTGTTGTGGTCGGAGGAGGCCCGGGAGGGTACGTTGCCGCCATTAAAGCAGCTCAGCTCGGTCTCAAGACGGCCTGCATAGAGAAACGCGGCACTCTGGGAGGTACCTGTCTCAATGTGGGATGCATCCCCTCTAAGGCATTGCTTCATTCCTCGCACATGTTTCATGAAGCTAAGCATGCATTTGCTGGCCATGGTGTGAAAGTGGGACAAGTGGAAATTGATATCCCTGCAATGATGGCTCAGAAAGAAAAGTCTGTTACTGGTCTGACAAAAGGAATTGAAGGACTTTTTAAGAAGAATAAAGTCACTTATGTTAAAGGTGCTGGTAAGATTATATCTGGAAATGAGGTGTCAGTGGATCTTCCTGATGGTAGTAGCAGTATAGTTAAAGGAAAACATATCATCATAGCAACTGGTTCAGATGTGAAGCCCCTTCCTGGAATCACTATTGATGAAAAGAAGATTGTTTCATCCACAGGAGCACTATCATTGACTGAGGTTCCGAAGAAGCTTGTAGTTATTGGTGCAGGTTACATTGGCTTAGAAATGGGTTCAGTATGGGGAAGGCTGGGTTCAGAAGTCACTGTTGTTGAATTTGCTCCTGAGATAGTTCCTACCATGGATGCAGAGGTACGGAGAACTTTCCAAAGAACATTAGAAAAACAGAAAATGAAGTTCATGTTGAAAACTAAGGTGATTGGCGTTGATGCATCAGGAACAGGGGTAAAACTGACATTGGAACCGGCTGCAGGAGGTGAACAGACCACTCTTGAGGCTGATGTAGTTCTTGTTTCTGCTGGCAGATCACCTTATACCAAAGGTCTTGGACTGGAAGAGCTTGGAGTAAAACTGGATAGAATGGGACGTGTGGAAGTTGATGATCATTTCAGGACAAATATTCCTGGAATTTATGCTATTGGTGATGTGATTCCTGGTCCCATGCTTGCACACAAGGCTGAAGAAGATGGCTTTGCCTGTGCAGAGCTTATTGCAGGAAAACCTGGACATGTGGACTATGACACTGTACCTGGAATTGTTTATACACATCCAGAGGTAGCTTCAGTAGGAAAGACAGAGGAGCAGGTCAAGGCTCTGAATACCCCATACAAAGTTGGAAAGTTCCCCTTTATGGCAAACAGTAGGGCTAGAACTATTGATGATGCAGATGGTTTAGTGAAAATAATTGCAGAGAAAGAAACTGACAAGATCCTTGGCGTGCACATTATGGGTCCAAACGCTGGGGAGATGATTCATGAAGCTGTTATTGCTTTACAATATGGAGCATCTAGTGAAGATATTGCTAGAACCTGTCATGGACACCCAACACTCAGTGAAGCTGTTAAAGAAGCTGCCATGGCAACATTTGACAAGCCTATCCACATTTAGTGTGGTGGATATTTTTTCTGGAACCAGTTATCATAGATTTATTTTTCATTTGGATATGTAATTTTCCTACTTAAAAATTGGACAGCATCCACAAGAAGTTTTCATGGGATGGTTTCACAATTCTGTTAGGAAATATGATTCATTTCATAGTTCTAAAACAGACTTTTGACAAGTATGAAGAAATGAGTTGTCATATGCAATTGAATAAAGACCATATTTCAAATTACATAAGAATTTGAAAATGCTGTAAACCTGTTGATTACTTTTTGTAGATAAATTAACAGTGTGACAGTGATGTTTAATTCTTGAATCTTGATATACGTTGTGGATAACGACAAACATGTTCAGCTTATCTCTGCAGGTGATTGAAGCCTATTTTTGTGAATTCTAGTTTC

Ace file of the UniGene uagpf_v2_unigene873

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23629	58/72
SustainPine v2.0	sp_v2.0_unigene79424	3/72
SustainPine v2.0	sp_v2.0_unigene80070	7/72

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydrolipoyl dehydrogenase n=2 Tax=Picea sitchensis RepID=B8LLJ4_PICSI	-	-	92%
FL-Next	sp=Dihydrolipoyl dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	dihydrolipoamide dehydrogenase precursor	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	copper ion binding	GO:0005507	Molecular Function	90%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	90%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	90%
Blast2go	apoplast	GO:0048046	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Mercuric reductase	IPR000815	-	-
Sma3	Dihydrolipoamide dehydrogenase	IPR006258	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, dimerisation	IPR004099	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class I, active site	IPR012999	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLJ4

Fln msg:

Fln protein: MAAMAGRWRGQLALIHKALRPTSSSEGLGRCVGALRTYSSSSTEENDVVVVGGGPGGYVAAIKAAQLGLKTACIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAKHAFAGHGVKVGQVEIDIPAMMAQKEKSVTGLTKGIEGLFKKNKVTYVKGAGKIISGNEVSVDLPDGSSSIVKGKHIIIATGSDVKPLPGITIDEKKIVSSTGALSLTEVPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFAPEIVPTMDAEVRRTFQRTLEKQKMKFMLKTKVIGVDASGTGVKLTLEPAAGGEQTTLEADVVLVSAGRSPYTKGLGLEELGVKLDRMGRVEVDDHFRTNIPGIYAIGDVIPGPMLAHKAEEDGFACAELIAGKPGHVDYDTVPGIVYTHPEVASVGKTEEQVKALNTPYKVGKFPFMANSRARTIDDADGLVKIIAEKETDKILGVHIMGPNAGEMIHEAVIALQYGASSEDIARTCHGHPTLSEAVKEAAMATFDKPIHI*

Protein Length: 511

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCGTTCTAGGGCGACGACTCCCCAATTGACCTCACCCTCTAGCGGCAGCCATTGGAAAAGGGTCGACCTTGGCTGTTATTTATTTGGTAGGAACAAACGCTGGGCCACAAAACTTCCACTCAGAAGATAACAGGCCATAGCTACCCTCCAAACTGCCATAATCTTTGATTATTTATTCGCCATTCGAAATTACAACAACAACAATATCCTGAGTGTGTATTCTGAGATCCATTCATCCATCTATCC_-_ATGGCAGCAATGGCAGGGAGATGGAGAGGCCAATTGGCTCTGATCCACAAAGCCTTGAGACCCACTTCTTCTTCCGAGGGTTTGGGAAGATGTGTGGGAGCTCTACGAACATATTCATCATCATCAACCGAAGAGAATGATGTTGTTGTGGTCGGAGGAGGCCCGGGAGGGTACGTTGCCGCCATTAAAGCAGCTCAGCTCGGTCTCAAGACGGCCTGCATAGAGAAACGCGGCACTCTGGGAGGTACCTGTCTCAATGTGGGATGCATCCCCTCTAAGGCATTGCTTCATTCCTCGCACATGTTTCATGAAGCTAAGCATGCATTTGCTGGCCATGGTGTGAAAGTGGGACAAGTGGAAATTGATATCCCTGCAATGATGGCTCAGAAAGAAAAGTCTGTTACTGGTCTGACAAAAGGAATTGAAGGACTTTTTAAGAAGAATAAAGTCACTTATGTTAAAGGTGCTGGTAAGATTATATCTGGAAATGAGGTGTCAGTGGATCTTCCTGATGGTAGTAGCAGTATAGTTAAAGGAAAACATATCATCATAGCAACTGGTTCAGATGTGAAGCCCCTTCCTGGAATCACTATTGATGAAAAGAAGATTGTTTCATCCACAGGAGCACTATCATTGACTGAGGTTCCGAAGAAGCTTGTAGTTATTGGTGCAGGTTACATTGGCTTAGAAATGGGTTCAGTATGGGGAAGGCTGGGTTCAGAAGTCACTGTTGTTGAATTTGCTCCTGAGATAGTTCCTACCATGGATGCAGAGGTACGGAGAACTTTCCAAAGAACATTAGAAAAACAGAAAATGAAGTTCATGTTGAAAACTAAGGTGATTGGCGTTGATGCATCAGGAACAGGGGTAAAACTGACATTGGAACCGGCTGCAGGAGGTGAACAGACCACTCTTGAGGCTGATGTAGTTCTTGTTTCTGCTGGCAGATCACCTTATACCAAAGGTCTTGGACTGGAAGAGCTTGGAGTAAAACTGGATAGAATGGGACGTGTGGAAGTTGATGATCATTTCAGGACAAATATTCCTGGAATTTATGCTATTGGTGATGTGATTCCTGGTCCCATGCTTGCACACAAGGCTGAAGAAGATGGCTTTGCCTGTGCAGAGCTTATTGCAGGAAAACCTGGACATGTGGACTATGACACTGTACCTGGAATTGTTTATACACATCCAGAGGTAGCTTCAGTAGGAAAGACAGAGGAGCAGGTCAAGGCTCTGAATACCCCATACAAAGTTGGAAAGTTCCCCTTTATGGCAAACAGTAGGGCTAGAACTATTGATGATGCAGATGGTTTAGTGAAAATAATTGCAGAGAAAGAAACTGACAAGATCCTTGGCGTGCACATTATGGGTCCAAACGCTGGGGAGATGATTCATGAAGCTGTTATTGCTTTACAATATGGAGCATCTAGTGAAGATATTGCTAGAACCTGTCATGGACACCCAACACTCAGTGAAGCTGTTAAAGAAGCTGCCATGGCAACATTTGACAAGCCTATCCACATTTAG___TGTGGTGGATATTTTTTCTGGAACCAGTTATCATAGATTTATTTTTCATTTGGATATGTAATTTTCCTACTTAAAAATTGGACAGCATCCACAAGAAGTTTTCATGGGATGGTTTCACAATTCTGTTAGGAAATATGATTCATTTCATAGTTCTAAAACAGACTTTTGACAAGTATGAAGAAATGAGTTGTCATATGCAATTGAATAAAGACCATATTTCAAATTACATAAGAATTTGAAAATGCTGTAAACCTGTTGATTACTTTTTGTAGATAAATTAACAGTGTGACAGTGATGTTTAATTCTTGAATCTTGATATACGTTGTGGATAACGACAAACATGTTCAGCTTATCTCTGCAGGTGATTGAAGCCTATTTTTGTGAATTCTAGTTTC

Fln Alignment:

Contig873___MAAMAGRWRGQLALIHKALRPTSSSEGLGRCVGALRTYSSSSTEENDXXXXXXXXXXXXAAIKAAQLGLKTACIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAKHAFAGHGVKVGQVEIDIPAMMAQKEKSVTGLTKGIEGLFKKNKVTYVKGAGKIISGNEVSVDLPDGSSSIVKGKHIIIATGSDVKPLPGITIDEKKIVSSTGALSLTEVPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFAPEIVPTMDAEVRRTFQRTLEKQKMKFMLKTKVIGVDASGTGVKLTLEPAAGGEQTTLEADVVLVSAGRSPYTKXXXXXXXXVKLDRMGRVEVDDHFRTNIPGIYAIGDVIPGPMLAHKAEEDGFACAELIAGKPGHVDYDTVPGIVYTHPEVASVGKTEEQVKALNTPYKVGKFPFMANSRARTIDDADGLVKIIAEKETDKILGVHIMGPNAGEMIHEAVIALQYGASSEDIARTCHGHPTLSEAVKEAAMATFDKPIHI
B8LLJ4______________MAAMAGRWRGRLALIHKALKPTSSSEGLGRCVGALRTYSSSSAEENDVVVVGGGPGGYVAAIKAAQLGLKTICIEKRGSLGGTCLNVGCIPSKALLQSSHMFYEAKHAFAGHGVKVGQVEIDIPAMMAQKEKSVTGLTKGIEGLFKKNKVTYVKGAGKIISGNEVSVDLLDGNSSIVKGKHIIIATGSDVKPLPGITIDEKKIVSSTGALSLTEVPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFASEIVPTMDGEVRKSFQRTLEKQKMKFMLKTKVIGVDASGTGVKLTLEPASGGEQTTLEADVVLVSAGRSPFTKGLGLEELGVKLDRMGRVEVDDHFRTNIPGIYAIGDVIPGPMLAHKAEEDGVACAELIAGKAGHVDYDTVPGIVYTHPEVASVGKTEEQVKALNIPYKVGKFPFMANSRARTIDDADGLVKIIAEKESDKILGVHIMGPNAGEIIHEAVIALQYGASSEDIARTCHGHPTLSEAVKEAAMATYDKPIHI

SNPs (tot: 152)

Position	A %	C %	G %	T %	Probability
202	60	40			1.0
212	40	60			1.0
213			60	40	1.0
217		16		83	0.994512
218			16	83	0.994512
219	83			16	0.994512
220	33	66			1.0
221	83		16		0.994512
222	83			16	0.994512
223		83	16		0.994512
225	83	16			0.994512
227	83			16	0.994512
228	83			16	0.994512
229		83	16		0.994512
230	83		16		0.994512
231	83	16			0.994512
233	83		16		0.994512
238	33	16	50		1.0
239	75	25			1.0
247		25		75	1.0
248	75	25			1.0
256	75			25	1.0
257		25	75		1.0
262	25	75			1.0
361		16		83	0.994512
363			83	16	0.994512
364		16	83		0.994512
365	83		16		0.994512
366	83			16	0.994512
369		16		83	0.994512
370		16	83		0.994512
376		16	83		0.994512
377	83			16	0.994512
385			83	16	0.994512
386	83	16			0.994512
405	80		20		0.995493
428		20	80		0.995493
436		20	80		0.995493
437		20	80		0.995493
438	80			20	0.995493
439			80	20	0.995493
441		80	20		0.995493
443		80		20	0.995493
445			80	20	0.995493
446		20	80		0.995493
449			80	20	0.995493
450		20	80		0.995493
451	20		80		0.995493
457		16		83	0.994512
460		83		16	0.994512
462	16	83			0.994512
464	83	16			0.994512
469	83		16		0.994512
472	83			16	0.994512
483	16		83		0.994512
548	83		16		0.994512
551		80	20		0.995493
552		80		20	0.995493
553		80	20		0.995493
554	20			80	0.995493
556		20		80	0.995493
557	80			20	0.995493
558	80			20	0.995493
562	71		14	14	0.984337
563			14	85	0.993533
564		14		85	0.993533
565		14	85		0.993533
566	14	71		14	0.984337
567		14	14	71	0.984337
568	14			85	0.993533
570	85	14			0.993533
573		85	14		0.993533
576		85	14		0.993533
577			85	14	0.993533
581	85			14	0.993533
582		14		85	0.993533
584	14		85		0.993533
598	87	12			0.992554
601	87		12		0.992554
605	87	12			0.992554
608			12	87	0.992554
614		87		12	0.992554
618		12	75		0.975346
619		12	87		0.992554
621		12	87		0.992554
622	12			87	0.992554
624	87	12			0.992554
625	87	12			0.992554
626	87	12			0.992554
627			87	12	0.992554
633	87			12	0.992554
637		12	87		0.992554
639		12	87		0.992554
640	12		87		0.992554
657	90	10			0.90298
658	90		10		0.90298
660		10	90		0.90298
661	90		10		0.90298
664	10		90		0.90298
666		10		90	0.90298
667		90		10	0.90298
668	90			10	0.90298
670	90		10		0.90298
671	90	10			0.90298
672	90			10	0.90298
675	90			10	0.90298
676	90	10			0.90298
678		10	90		0.90298
682	10		90		0.90298
714		14		85	0.999981
715			14	85	0.999981
717		14		85	0.999981
718	85		14		0.999981
719	85			14	0.999981
722	85	14			0.999981
723		14	85		0.999981
724	85			14	0.999981
725	85			14	0.999981
726			14	85	0.999981
727	85		14		0.999981
728	85	14			0.999981
729	85			14	0.999981
736	14			85	0.999981
762	42			57	1.0
888		16	83		0.999991
889	83		16		0.999991
891		16		83	0.999991
894			16	83	0.999991
895	16			83	0.999991
897	83	16			0.999991
899		83		16	0.999991
900		83	16		0.999991
901	83		16		0.999991
903	83			16	0.999991
905			83	16	0.999991
906	83	16			0.999991
907	16		83		0.999991
909	83			16	0.999991
911	16			83	0.999991
942	60		40		1.0
1053	83		16		0.994512
1099	77	22			0.999999
1101		22	77		0.999999
1103		22		77	0.999999
1104	22	77			0.999999
1331			83	16	0.994512
1332	83			16	0.994512
1333	83	16			0.994512
1334			16	83	0.994512
1335		16		83	0.994512
2054	75	25			0.996473
2063	75		25		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
217	229	ACA ACA ACA ACA A	13
386	397	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain