SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene866

Length: 663 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene866

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21088	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=DEAD-box ATP-dependent RNA helicase 20	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	dead-box atp-dependent rna helicase	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
16		33		66	0.997452
21		66	33		0.997452
23		66	33		0.997452
25	66	33			0.997452
26		33	66		0.997452
28	66			33	0.997452
32			66	33	0.997452
34	66			33	0.997452
35		33	66		0.997452
38	20		40	20	0.994159
39	80	20			0.995493
40	80	20			0.995493
96	60	40			1.0
102	83	16			0.994512
104	83			16	0.994512
105		16	83		0.994512
107	83			16	0.994512
108			83	16	0.994512
109	16			83	0.994512
115			16	83	0.994512
118			16	83	0.994512
122	16		83		0.994512
123		16		83	0.994512
125		16	83		0.994512
126	16		83		0.994512
262	60		40		1.0
311		35	64		1.0
460		60		40	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
237	248	GGA GGA GGA GGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain