SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene828

Length: 871 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene828

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12362	37/43

Source	Descriptions	Term	Type	Identity
AutoFact	ATP citrate lyase, putative; 3734-7120 n=13 Tax=Magnoliophyta RepID=Q9C522_ARATH	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	atp-citrate synthase beta chain protein 1-like	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	ATP citrate synthase.	EC:2.3.3.8	-	0.0	95%

Source	KEGGs	Term	Type	Identity
Blast2go	Citrate cycle (TCA cycle)	00020		95%
Blast2go	Carbon fixation pathways in prokaryotes	00720		95%
Blast2go	Biosynthesis of phenylpropanoids	01061		95%
Blast2go	Biosynthesis of terpenoids and steroids	01062		95%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		95%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		95%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065		95%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066		95%
Blast2go	Biosynthesis of plant hormones	01070		95%
Blast2go	Metabolic pathways	01100		95%
Blast2go	Biosynthesis of secondary metabolites	01110		95%
Blast2go	Succinate--CoA ligase (ADP-forming).	EC:6.2.1.5	-	95%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	95%
Blast2go	Propanoate metabolism	00640	95%
Blast2go	C5-Branched dibasic acid metabolism	00660	95%
Blast2go	Carbon fixation pathways in prokaryotes	00720	95%
Blast2go	Biosynthesis of phenylpropanoids	01061	95%
Blast2go	Biosynthesis of terpenoids and steroids	01062	95%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	95%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	95%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	95%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	95%
Blast2go	Biosynthesis of plant hormones	01070	95%
Blast2go	Metabolic pathways	01100	95%
Blast2go	Biosynthesis of secondary metabolites	01110	95%

Source	GOs	Term	Type	Identity
Blast2go	acetyl-CoA biosynthetic process	GO:0006085	Biological Process	95%
Blast2go	cellular carbohydrate metabolic process	GO:0044262	Biological Process	95%
Blast2go		GO:0008415	Molecular Function	95%
Blast2go	binding	GO:0005488	Molecular Function	95%
Blast2go	ATP citrate synthase activity	GO:0003878	Molecular Function	95%
Blast2go	succinate-CoA ligase (ADP-forming) activity	GO:0004775	Molecular Function	95%
Blast2go	lyase activity	GO:0016829	Molecular Function	95%
Blast2go	citrate lyase complex	GO:0009346	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%
Blast2go	cytosol	GO:0005829	Cellular Component	95%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
354		87		12	0.992554
369		16		83	0.999991
377		11	88		0.999952
378	88	11			0.999952
379	88			11	0.999952
382			11	88	0.999952
383		11		88	0.999952
387		88		11	0.999952
409			80	19	1.0
410		3	19	76	1.0
411			73	23	1.0
415		12	88		1.0
417		8		92	0.999718
433		93		6	0.999153
434	3	87	9		1.0
435	6			93	0.999153
437		6		90	0.997073
441	3			90	0.997073
442	90	3	6		0.997073
445			6	93	0.999153
446			93	6	0.999153
450	3	6	90		0.997073
451	6	3	90		0.997073
491		5		94	0.998578
494	91			2	0.99441
495	91		2		0.99441
496	94			5	0.998578
500		94		5	0.998578
852	25			25	0.995533
854	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain