SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene776

Length: 1603 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene776

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18926	101/114
SustainPine v2.0	sp_v2.0_unigene78559	8/114

Source	Descriptions	Term	Type	Identity
AutoFact	protein transmembrane nine 7 [Arabidopsis thaliana] dbj\|BAB01926.1\| multispanning membrane protein-like [Arabidopsis thaliana] gb\|AEE75410.1\| protein transmembrane nine 7 [Arabidopsis thaliana]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	endosomal p24a protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	cellular zinc ion homeostasis	GO:0006882	Biological Process	88%
Blast2go	cellular copper ion homeostasis	GO:0006878	Biological Process	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	88%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC25

Fln msg:

Fln protein: MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISNYNQLETQDEAQEETGWKLVHGDVFRSPSNAGLLCVYAGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKTNTLKTAFTFPGIVFGIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLHQFYYIFGFLFIVFVILIVTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMTIISYAFFVLTGTMGFYACFWFVRTIYASVKID*

Protein Length: 372

Fln nts: GGTAAAGATATTATATTTACTTACGATGTGTCATTCAAGGAAAGCCCTATCAAATGGGCTTCTCGATGGGATACATATCTTCTC_-_ATGACAGATGATCAGATCCACTGGTTCTCTATTATCAACTCATTAATGATTGTCTTGTTCCTTTCTGGGATGGTGGCAATGATTATGATGAGAACCTTGTATCGGGATATCTCAAATTATAATCAATTGGAGACACAGGATGAAGCCCAAGAAGAAACTGGATGGAAGCTTGTCCATGGAGATGTATTCAGGTCCCCAAGTAATGCAGGTTTACTATGTGTCTATGCAGGAACTGGGGTACAGTTTTTTGGGATGACACTTGTTACAATGATATTTGCCATGCTTGGGTTTCTTTCACCATCCAATCGTGGTGGACTGATGACAGCTATGGTTCTCTTGTGGGTGTTCATGGGTTTGTTTGCTGGTTACTCTTCTGCTCGTCTGTATAAGATGTTCAAGGGCACAGAATGGAAAACAAACACGCTGAAGACTGCGTTCACCTTCCCAGGCATTGTTTTTGGCATTTTCTTTGTCCTCAATGCACTGATCTGGGGTGAAAAGTCCTCTGGTGCAGTACCATTTGGGACAATGTTTGCTTTGGTATTTTTATGGTTTGGGATATCTGTGCCTTTGGTCTTTGTTGGTAGTTACTTTGGTTACAAGAAACCTGCAATTGAAGATCCTGTTAAGACAAATAAAATTCCCAGGCAGATTCCAGAGCAGGCATGGTACATGCAGCCAGTTTTCTCAGTACTCATTGGAGGCATATTACCATTTGGCGCGGTTTTCATTGAATTATTCTTCATCTTAACATCGATCTGGCTGCATCAATTTTATTACATTTTTGGGTTTCTGTTCATTGTCTTTGTTATCCTTATTGTTACTTGTGCGGAGATCACTATTGTCCTCTGCTACTTTCAGTTGTGTAGTGAGGACTACCACTGGTGGTGGAGAGCTTATCTAACTTCAGGCTCATCTGCACTTTACTTATTCCTGTATGCTACATTCTACTTCTTCACCAAGCTGGAGATTACGAAACTTGTCTCTGGTATTCTGTACTTCGGCTACATGACAATTATCTCATATGCTTTCTTTGTATTGACGGGTACAATGGGTTTCTACGCATGCTTCTGGTTTGTACGGACCATTTATGCTTCAGTGAAGATTGACTGA___AGTTACATGCTGTAGCCAAATTTTCCTCAAGGCTCAAATTTGCATTTGAGCAGAATCAGGTGGTAGAATGCTAGATGTGCGTTCTTTGCTCTAGTGTTTAGGAGAATAGAATAGGAATTTAATTGTGCTAGCAAGAGGAGATATCTGAGAGGATATCATGAATATCACGTATTAGTTGGGTAGGAGGTAGGAGGTACAATTTTTTCAAAGTTGCAGGCTACCGAGTTATTCTGCATTGTACTCAAATGAGTTTGTTAGGATTGATTTTTTATTTCTTGATGTACTGTTTGCAAAGAATTATGATTCATACTTGCTATGGCTGTCATGCCTTTCAACCAGACTCTGGTGGCATACTAATTCCTATGCAAGATTTATGGTATATGATATACAGATATTTTTTGGTATT

Fln Alignment:

Contig776___MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISNYNQLETQDEAQEETGWKLVHGDVFRSPSNAGLLCVYAGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKTNTLKTAFTFPGIVFGIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMTIISYAFFVLTGTMGFYACFWFVRTIYASVKID
D5AC25______________MTDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDISKYNQLETQDEAQEETGWKLVHGDVFRPPTHSSLLCVYVGTGVQFFGMTLVTMIFAMLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGSEWKKNTLKTAFMFPGIVFCIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFIGSYFGYKKPAIEDPVKTNKIPRQIPEQAWYMQPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLVTCAEITIVLCYFQLCSEDYHWWWRAYLTSGSSALYLFLYAIFYFFTKLEITKLVSGILYFGYMTIISYAFFVLTGTIGFYACFWFVRKIYSSVKID

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
581		20		80	1.0
583	80			20	1.0
584	80	20			1.0
585	80		20		1.0
586	80			20	1.0
588	20			80	1.0
600		20	80		1.0
604	13	86			0.999973
605	88	11			0.999952
606			11	88	0.999952
608		11		88	0.999952
610			88	11	0.999952
614	88	11			0.999952
615	88			11	0.999952
618			11	88	0.999952
619		11		88	0.999952
625	13			86	0.999973
626		13		86	0.999973
788		10	90		0.999898
790	90			10	0.999898
1098		12		88	1.0
1100	87			12	1.0
1103	87		12		1.0
1105			12	87	1.0
1107		13		86	1.0
1110		86		13	1.0
1111	86		13		1.0
1112			13	86	1.0
1113	86	13			1.0
1117	13			86	1.0
1118		13		86	1.0
1121	9			90	0.999842
1242		10		90	0.90298
1260		5	94		0.998744
1263		5	94		0.998744
1270		5		94	0.998744
1274	83	9	3	3	1.0
1276	84	3	1	9	1.0
1277		11		88	1.0
1280		3	94		0.95615
1282	1	9	84		1.0
1284		3		96	0.99245
1285	3	88	7		1.0
1286			7	92	1.0
1287		7	1	90	1.0
1291	5			94	0.999997
1294	96	3			0.993037
1295	3		96		0.993591

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain