SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene725

Length: 491 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene725

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9709	12/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S27 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SLV7_PHYPA	-	-	2.0e-33	80%
FL-Next	sp=Ribosomal protein S27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	ribosomal protein s27	-	-	1.4013e-44	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	1.4013e-44	97%
Blast2go	translation	GO:0006412	Biological Process	1.4013e-44	97%
Blast2go	metal ion binding	GO:0046872	Molecular Function	1.4013e-44	97%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	1.4013e-44	97%
Blast2go	cell wall	GO:0005618	Cellular Component	1.4013e-44	97%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	1.4013e-44	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S27e	IPR000592	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
161		33		66	0.997452
162			33	66	0.997452
164		33	66		0.997452
165	66		33		0.997452
166	66			33	0.997452
168	33			66	0.997452
170		16	83		0.994512
172		16		83	0.994512
174			83	16	0.994512
175		16	83		0.994512
176	16			83	0.994512
177	66	16			0.988813
178		83	16		0.994512
179	66			33	1.0
180	66	16	16		0.988813
181	83		16		0.994512
182	66	33			1.0
185		16	66	16	0.988813
186	16	16		66	0.988813
187	16		83		0.994512
194	90	10			0.90298
195	90		10		0.90298
197		15	84		0.999986
200	84	15			0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain