SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene696

Length: 1981 nt

UniGene Fasta

>uagpf_v2_unigene696
TGACCTTGGCTGTCACTCAATTTTTTCCTCTTCATTTTTCCGTCATTTCGTCTGAGGGTTTGTAGCGATGCGTGTAGAGGAACTCGGAGGAATTCTGAAACCTGCCTCAGACTTGGAGGCCGCTGCAAACGCGAAGGAAAAATTGAAGGAGAAACATCAGCTCCCCAAAGAATCTAACAGAATGGTGAAGCATGGCGAGGGTTTGCGCCAGTATTACCTTCAACATATTCACGATCTCCAGCTCCAGGTCCGTCAGAAGACGCACAATCTTAACCGTCTTGAAGCCCAGCGAAACGATCTTAATTCCAAAGTGAGAGCACTGAGGGAGGAATTACAGTTGCTCCAGGAACCGGGATCGTATGTTGGTGAAGTTGTTAAAGTTATGGGGAAGTCTAAAGTTTTGGTTAAGGTGCATCCTGAAGGAAAGTATGTAGTTGATGTAGACAAGAACATTGACATAACAAAAATCACACCTTCTACAAGAGTAGCTCTTCGTAATGATAGCTACGTGCTTCATTTGATTTTGCCTAGCAAAGTAGACCCGTTGGTCAACCTGATGAAGGTGGAGAAAGTGCCGGATTCTACATATGACATGATTGGAGGACTTGACCAACAGATTAAGGAAATCAAAGAGGTTATCGAGCTTCCTATCAAGCATCCAGAACTGTTTGAAAGTCTTGGAATAGCTCAACCAAAGGGTGTACTGTTGTATGGACCCCCTGGCACTGGAAAGACATTGCTTGCAAGGGCAGTTGCTCATCACACAGACTGCACCTTTATTAGAGTTTCAGGTTCTGAATTGGTTCAGAAGTACATAGGTGAAGGGTCAAGGATGGTTCGTGAGCTTTTTGTTATGGCAAGAGAACATGCTCCCTCGATTATATTTATGGATGAAATTGACAGTATAGGATCTGCTCGAATGGAGTCTGGCACTGGTAATGGTGATAGTGAAGTCCAGCGAACTATGCTTGAGCTCCTTAATCAACTTGACGGCTTTGAGGCATCTAATAAGATTAAGGTTCTAATGGCTACAAACCGGATAGATATTCTTGATCAAGCACTTCTTCGACCTGGTAGGATTGACAGGAAAATTGAATTTCCTAATCCTAATGAAGAGTCTCGTTTTGACATTCTGAAAATCCACTCAAGAAAAATGAATCTAATGCGGGGCATCGATCTAAAGAAAATTGCTGAAAAAATGAGTGGTGCATCAGGTGCAGAGCTTAAGGCTGTATGCACAGAAGCTGGGATGTTTGCATTGCGGGAGCGACGTGTCCATGTTACACAAGAAGATTTTGAAATGGCTGTAGCTAAGGTTATGAAAAAGGAAACAGAGAAGAACATGTCACTGAGGAAACTATGGAAGTAAGGAAAGGATCAGTGGATTCGTTGGTTCAATATATCAAGCTACTGTGTGTATTTCAGTGGGTTAAACATGTCCAAGTGGTTGTATTACTTGCGATGGCAACATGGAAAATAAGTGGATATTTTGCAAGTGAAATTTGTTTCTAAATTCATTTTGGGCTTGAAGATGCCTTGGTCTATATATTCTCTGCGGGAAGCTTGGACTTCGAATCAAAAAATTTAGTTAATTTCCAAAGCACAAAAACATCCTCATCTCTTATTTTAGCAAGAATTAGAAATGTGGTTATAGTTATTGTTGAATATCATGTCAGATATGGCAGTGCTTTTCAAATTACGGTTTGGAACTTTCTCCCAGAGATGCATATAGTGTTGCACCTTTGTAAGAATTTTAAACGTGATTTCGTTTTGAGTTAGCAAGATGCAGCACTGAAATGTAGTATTCTGGTATTGGATGAGCTAGTTATTAGTGTTTAGGCCACACTACTGCTATTTAAATCAGTGTCTGTACTATGTAGTAACTTCTTTGGAAAAGATGGTATATTAGGTGATAAATACAAAATGGTGTTATAGGCCTACCCTTTTCTCATATGGAAATTTATATTTAAGAAGAAACTCT

Ace file of the UniGene uagpf_v2_unigene696

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16764	149/158
SustainPine v2.0	sp_v2.0_unigene22691	1/158

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit 8 n=3 Tax=Spermatophyta RepID=Q9M613_PINTA	-	-	95%
FL-Next	tr=26S proteasome regulatory subunit 8; Pinus taeda (Loblolly pine).	-	-	100%
Blast2go	26s proteasome regulatory particle triple-a atpase subunit6	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	98%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	98%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9M613

Fln msg:

Fln protein: MRVEELGGILKPASDLEAAANAKEKLKEKHQLPKESNRMVKHGEGLRQYYLQHIHDLQLQVRQKTHNLNRLEAQRNDLNSKVRALREELQLLQEPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDVDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMSGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*

Protein Length: 435

Fln nts: TGACCTTGGCTGTCACTCAATTTTTTCCTCTTCATTTTTCCGTCATTTCGTCTGAGGGTTTGTAGCG_-_ATGCGTGTAGAGGAACTCGGAGGAATTCTGAAACCTGCCTCAGACTTGGAGGCCGCTGCAAACGCGAAGGAAAAATTGAAGGAGAAACATCAGCTCCCCAAAGAATCTAACAGAATGGTGAAGCATGGCGAGGGTTTGCGCCAGTATTACCTTCAACATATTCACGATCTCCAGCTCCAGGTCCGTCAGAAGACGCACAATCTTAACCGTCTTGAAGCCCAGCGAAACGATCTTAATTCCAAAGTGAGAGCACTGAGGGAGGAATTACAGTTGCTCCAGGAACCGGGATCGTATGTTGGTGAAGTTGTTAAAGTTATGGGGAAGTCTAAAGTTTTGGTTAAGGTGCATCCTGAAGGAAAGTATGTAGTTGATGTAGACAAGAACATTGACATAACAAAAATCACACCTTCTACAAGAGTAGCTCTTCGTAATGATAGCTACGTGCTTCATTTGATTTTGCCTAGCAAAGTAGACCCGTTGGTCAACCTGATGAAGGTGGAGAAAGTGCCGGATTCTACATATGACATGATTGGAGGACTTGACCAACAGATTAAGGAAATCAAAGAGGTTATCGAGCTTCCTATCAAGCATCCAGAACTGTTTGAAAGTCTTGGAATAGCTCAACCAAAGGGTGTACTGTTGTATGGACCCCCTGGCACTGGAAAGACATTGCTTGCAAGGGCAGTTGCTCATCACACAGACTGCACCTTTATTAGAGTTTCAGGTTCTGAATTGGTTCAGAAGTACATAGGTGAAGGGTCAAGGATGGTTCGTGAGCTTTTTGTTATGGCAAGAGAACATGCTCCCTCGATTATATTTATGGATGAAATTGACAGTATAGGATCTGCTCGAATGGAGTCTGGCACTGGTAATGGTGATAGTGAAGTCCAGCGAACTATGCTTGAGCTCCTTAATCAACTTGACGGCTTTGAGGCATCTAATAAGATTAAGGTTCTAATGGCTACAAACCGGATAGATATTCTTGATCAAGCACTTCTTCGACCTGGTAGGATTGACAGGAAAATTGAATTTCCTAATCCTAATGAAGAGTCTCGTTTTGACATTCTGAAAATCCACTCAAGAAAAATGAATCTAATGCGGGGCATCGATCTAAAGAAAATTGCTGAAAAAATGAGTGGTGCATCAGGTGCAGAGCTTAAGGCTGTATGCACAGAAGCTGGGATGTTTGCATTGCGGGAGCGACGTGTCCATGTTACACAAGAAGATTTTGAAATGGCTGTAGCTAAGGTTATGAAAAAGGAAACAGAGAAGAACATGTCACTGAGGAAACTATGGAAGTAA___GGAAAGGATCAGTGGATTCGTTGGTTCAATATATCAAGCTACTGTGTGTATTTCAGTGGGTTAAACATGTCCAAGTGGTTGTATTACTTGCGATGGCAACATGGAAAATAAGTGGATATTTTGCAAGTGAAATTTGTTTCTAAATTCATTTTGGGCTTGAAGATGCCTTGGTCTATATATTCTCTGCGGGAAGCTTGGACTTCGAATCAAAAAATTTAGTTAATTTCCAAAGCACAAAAACATCCTCATCTCTTATTTTAGCAAGAATTAGAAATGTGGTTATAGTTATTGTTGAATATCATGTCAGATATGGCAGTGCTTTTCAAATTACGGTTTGGAACTTTCTCCCAGAGATGCATATAGTGTTGCACCTTTGTAAGAATTTTAAACGTGATTTCGTTTTGAGTTAGCAAGATGCAGCACTGAAATGTAGTATTCTGGTATTGGATGAGCTAGTTATTAGTGTTTAGGCCACACTACTGCTATTTAAATCAGTGTCTGTACTATGTAGTAACTTCTTTGGAAAAGATGGTATATTAGGTGATAAATACAAAATGGTGTTATAGGCCTACCCTTTTCTCATATGGAAATTTATATTTAAGAAGAAACTCT

Fln Alignment:

Contig696___MRVEELGGILKPASDXXXXXXXXXXXXXXHQLPKESNRMVKHGEGLRQYYLQHIHDLQLQVRQKTHNLNRLEAQRNDLNSKVRALRXXXXXXXXPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDVDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMSGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK
Q9M613______________MRVEELGGILKPASDLEAAANAKEKLKEKHQLPKESNRMVKHGEGLRQYYLQHIHDLQLQVRQKTHNLNRLEAQRNDLNSKVRALREELQLLQEPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDVDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMSGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK

SNPs (tot: 109)

Position	A %	C %	G %	T %	Probability
271		48		51	1.0
292	54		45		1.0
518			20	80	0.995493
520		80	20		0.995493
523		20		80	0.995493
527	80		20		0.995493
528		20		80	0.995493
530			20	80	0.995493
532		20	80		0.995493
533	20	80			0.995493
537		20	80		0.995493
538	20	80			0.995493
560		83	16		0.994512
562		16	83		0.994512
563	83		16		0.994512
567	83	16			0.994512
568		16	83		0.994512
569			83	16	0.994512
573	83			16	0.994512
575	83			16	0.994512
576	83	16			0.994512
578		16	83		0.994512
583	16		83		0.994512
602	85	14			0.993533
603			14	85	0.993533
605		14	85		0.993533
607	85			14	0.993533
609	14		85		0.993533
610	85	14			0.993533
615	85		14		0.993533
617		85		14	0.993533
618	85		14		0.993533
619	85			14	0.993533
623	85	14			0.993533
625		14		85	0.993533
714		12		87	0.992554
717	87	12			0.992554
718			12	87	0.992554
719			87	12	0.992554
724		87	12		0.992554
725		87	12		0.992554
729			87	12	0.992554
736	87			12	0.992554
737	87			12	0.992554
738	87	12			0.992554
765	77		22		0.999999
767		77	22		0.999999
770	77	22			0.999999
771		77		22	0.999999
772	77			22	0.999999
774	75		25		1.0
778		75		25	1.0
779		25		12	1.0
833	10		90		0.90298
836	90		10		0.90298
837	90			10	0.90298
838		22	77		0.999999
839	11	11	77		0.968132
840	88			11	0.923564
844		11		88	0.923564
849		11	88		0.923564
851		11	88		0.923564
854	11			88	0.923564
999		85		14	0.993533
1175		25		75	0.996473
1179			75	25	0.996473
1181	25		75		0.996473
1183	75	25			0.996473
1185		75		25	0.996473
1187	75	25			0.996473
1189		75	25		0.996473
1192	75	25			0.996473
1193	75			25	0.996473
1194		25	75		0.996473
1200		25		75	0.996473
1242		10		90	0.90298
1245	90		10		0.90298
1251	90	10			0.90298
1252			90	10	0.90298
1253	90			10	0.90298
1254	90		10		0.90298
1259			90	10	0.90298
1260		10	90		0.90298
1263		10	90		0.90298
1264	10			90	0.90298
1341	85	14			0.999981
1342	85		14		0.999981
1343		85		14	0.999981
1344	85	14			0.999981
1346	85			14	0.999981
1349	85	14			0.999981
1350			85	14	0.999981
1351	85			14	0.999981
1352	85		14		0.999981
1353		81	18		1.0
1354	75	18	6		1.0
1437		11		88	0.999952
1439			88	11	0.999952
1440		11	88		0.999952
1441			11	88	0.999952
1443	88		11		0.999952
1445	88	11			0.999952
1447	88			11	0.999952
1450			11	88	0.999952
1454	88			11	0.999952
1791		61	38		1.0
1793	61		38		1.0
1855		46	53		1.0
1898		75		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain