SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene622

Length: 1106 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene622

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19691	45/45

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hydroxyproline-rich glycoprotein-like protein n=3 Tax=Arabidopsis RepID=Q8VYM7_ARATH	-	-	2.0e-16	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	hydroxyproline-rich glyco protein	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	0.0	80%
Blast2go	RNA processing	GO:0006396	Biological Process	0.0	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXV2

Fln msg: Distance to subject end: 311 aas, your sequence is shorter than subject: 205 - 516

Fln protein: MAGAFGGPYASMAGQNQNAGQINGQSNPSGNSASAAGNRSFTSHIAGMSKPQLYDLMSQMKVLIEQNEQQARQILVANPAMTKTLFQAQIMLGMLRPPQVMPNIQQSLSQPPQPVQVGPQGQIQPRPQGQMNSVQSQVPPRQPTQMQVGQHGQMPMIPQSQPQSTAMQPSIQRPLSIPQPQMQAPQQSQAHLPLQPASQSMQQPP

Protein Length: 206

Fln nts: CGTGACCTTGGCTGTCACTCACTCTTGTTCCCTATTGCTCCTCCATGGCTTCGGCGGGTTTGTGCTTCGTCTAAGCTTCTTCGTGGTTTCGCAGTCGCTGCGGCATATTTCGTTGCCTGAACCTTTTTCAGGAAGAACGATATTAAACCACGGAGAAATTTTAGTAACTTGCCTGCAGAAGAGCCAATAGTTCTGTTTTTCGTTAAAGAAAGCATAGATATAGACTTCCGTGGACTGGTTCGTTGTGACTTCTTGGTCCAGTTCTGGATATGGTTGGGGAGTGACAATTGCTTGAATTTCACTATTGGCAATTTGAAAGAGATAACTCGTTGAAGGCTGTGGTCCTTGGTCAATGCGATTGTCAAGGGAGGGAGTTCAGAGGTTTCTGTTTGCATAGGTGTCTTCTTCCTTCGAGTTAGGAGCAAGTAGAAGTATTGGAAGCTTTCAAGGATCATTGTTGGAAGCTTTCGAACAGCAGGAACTGTCAGCA_-_ATGGCAGGAGCTTTTGGAGGCCCGTATGCCTCTATGGCAGGTCAAAATCAAAATGCAGGACAGATAAATGGCCAGTCAAATCCCAGTGGAAATAGTGCCAGTGCAGCTGGTAACCGCTCTTTCACCTCTCACATAGCTGGCATGTCAAAACCCCAGCTTTATGACCTTATGTCTCAAATGAAGGTTCTAATTGAACAAAATGAACAACAAGCTCGCCAGATTTTGGTCGCAAATCCAGCAATGACAAAAACTCTATTTCAGGCACAGATAATGCTTGGTATGCTGCGGCCTCCACAAGTGATGCCTAACATCCAGCAGTCTCTAAGTCAGCCTCCTCAACCGGTGCAAGTAGGGCCTCAGGGGCAGATTCAACCCAGACCACAGGGTCAGATGAATTCAGTACAAAGTCAAGTACCGCCTAGGCAGCCAACACAGATGCAAGTTGGGCAGCATGGTCAGATGCCAATGATACCACAGTCTCAGCCTCAAAGCACTGCAATGCAACCATCTATACAGCGGCCTTTATCCATACCTCAGCCTCAGATGCAAGCTCCCCAACAATCTCAGGCTCATTTGCCTCTTCAACCAGCATCCCAATCTATGCAACAACCACCAC

Fln Alignment:

Contig622___MAGAFGGPYASMAXXXXXXXXXXXXXXXXXXXXXXXXXRSFTSHIAGMSKPQLYDLMSQMKVLIEQNEQQARQILVANPAMTKTLFQAQIMLGMLRPPQVMPNXXXXXXXXXXXXXXXXXXXXXXXXXXXMNSVQSQVPPRQPTQMQVGQHGXXXXXXXXXXXXTAMQPSIQRPLSIXXXXXXXXXXXXXHLPLQPASQSMQQPP
A9NXV2______________MAGAFGGQYTSMAGQNQNAGQINGQSNPSGNSANAAGNRSFTSHIAGMSKPQLYDLMSQMKLLIEQNEQQARQILVANPAMTKTLFQAQIMLGMLRPPQVMPNIQQSLSQPPQPVQVGHQGQIQPRPQGQMNSVQSQIQPRQTTQMQVGQHGQMPMIPQSQPQSTAMQPSIQRPLPIPQPQMQAVQQSQVHLPLQPASQSMQQPP

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
26	28			71	1.0
112			85	14	0.999981
197		20		80	1.0
517	80		20		0.995493
525		80	20		0.995493
526			20	80	0.995493
527	80	20			0.995493
530			80	20	0.995493
534		20	80		0.995493
551	75			25	0.996473
613		75	25		0.996473
614			25	75	0.996473
618	75		25		0.996473
634		33		66	0.997452
655			25	75	0.996473
657		25		75	0.996473
658	75		25		0.996473
659		25		75	0.996473
666	75		25		0.996473
667			25	75	0.996473
668		25	75		0.996473
670		75	25		0.996473
675	75	25			0.996473
677		25	75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain