SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene602

Length: 786 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene602

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1865	11/12

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8E8

Fln msg: Overlapping hits, possible frame ERROR between 723 and 723, STOP codon was not found. Distance to subject end: 2 aas, atg_distance in limit (1-15): atg_distance = 1, your sequence is shorter than subject: 243 - 264

Fln protein: MLYSISDEQVQEIKISPGIMLLIFERTSGHVPLKILSIEDGTVLKSFNFLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSHMTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGVLVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAHPDGSDEEENVGSINMSNILTGKCLAKIRANDPNVRISPRNRPNASAIRSTVQEALEDITAxxYDEERNEIYTGNRHGLIHVW

Protein Length: 244

Fln nts: GTCGTGACCTTGGCTGTCACTCACATCTACAAAGTTTTTGATTTGAAGAATTATACA_-_ATGTTGTACTCAATATCTGATGAACAAGTTCAAGAAATAAAGATAAGTCCAGGCATAATGTTATTAATATTTGAGAGAACTTCTGGTCATGTTCCACTGAAGATCTTATCCATAGAAGATGGTACAGTTTTAAAATCCTTCAATTTTTTGTTGCATCGCAACAAAAAAGTGGATTTCATTGAGCAATTCAATGAAAAGCTCCTTGTAAAACAAGAAAACGAGAACCTCCAAATACTAGATGTTCGGAATTCACACATGACTGAAGTGAGCAGGACAGAGTTTATGACACCGTCAGCCTTTATTTTCTTGTATGAGAATCAATTATTTTTAACCTTCCGCAATCGCACTGTTGCTGTTTGGAATTTCCGAGGAGTGCTGGTGACATCTTTTGAAGACCACTTGTTATGGCATCCTGACTGCAATACAAATAACATCTATATCACCAGTGACCAAGATTTGATAATTTCTTATTGCAAGGCCCATCCTGATGGATCTGATGAAGAAGAAAATGTGGGCTCCATAAACATGAGCAACATCTTGACTGGAAAATGTCTTGCTAAGATTCGTGCAAATGATCCAAACGTAAGGATTAGTCCTAGAAATCGGCCAAATGCATCGGCAATCAGAAGCACTGTTCAAGAAGCTCTCGAAGACATTACTGCTxxxxxxTATGACGAGGAGAGAAATGAGATCTACACTGGCAATAGACATGGTTTAATACATGTCTGGT

Fln Alignment:

Contig602___SPGIMLLIFERTSGHVPLKILSIEDGTVLKSFNFLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSHMTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGVLVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAHPDGSDEEENVGSINMSNILTGKCLAKIRANDPNVRISPRNRPNASAIRSTVQEALEDITALFYDEERNEIYTGNRHGLIHVW
D5A8E8______________SSGIMLLIFDRASGHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSQLTEVSRAEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKALPLSSGAEENVGSINISNILTGKCLAKIRANDPNVQISPRNRPNASTIRSTVEEALEDITALFYDEERNEIYTGNWHGLVHVW

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
356			12	87	0.992554
358		14		85	0.993533
359	85		14		0.993533
361			16	83	0.994512
362	16			83	0.994512
363		16		83	0.994512
368			16	83	0.994512
369	83	16			0.994512
372	83			16	0.994512
373		16	83		0.994512
375	83	16			0.994512
398	87	12			0.992554
399	87		12		0.992554
403		87	12		0.992554
406		12		87	0.992554
407			87	12	0.992554
409			12	87	0.992554
415	12			87	0.992554
416		12		87	0.992554
417			87	12	0.992554
418		12	87		0.992554
469		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain