SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene500

Length: 766 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene500

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7052	21/22

Source	Descriptions	Term	Type	Identity
AutoFact	AMP-activated protein kinase, gamma regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9RV78_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	amp-activated protein gamma regulatory	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
416			50	50	1.0
419	50		50		1.0
420			66	33	0.997452
421	50		50		1.0
425	50			50	1.0
430		20		80	0.995493
434	40		20	40	1.0
435		80		20	0.995493
436			20	80	0.995493
437	20			80	0.995493
441			80	20	0.995493
442			20	80	0.995493
443			20	80	0.995493
446			20	80	0.995493
447			80	20	0.995493
448	80	20			0.995493
450		20		80	0.995493
453	20		80		0.995493
484	71			28	1.0
488	71		28		1.0
492		28	71		1.0
496	71		28		1.0
507			71	28	1.0
509	87		12		0.992554
510			62	12	1.0
512			12	87	0.992554
514			12	87	0.992554
516	85	14			0.993533
519	85		14		0.993533
523			75	25	1.0
526		10	90		0.90298
527	10			90	0.90298
529		90	10		0.90298
530	10			90	0.90298
532		10	90		0.90298
533		10		90	0.90298
535		81	18		0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain