SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene420

Length: 435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene420
CTTTGCAAAAGGCAAGTAATGGCGGCAAAATTTGAGATCGAGAAAGCAATCTTGAGAAAAGAGAATTGCTTGCCAATTATTGAAGAGAGACATTGGAAAATGTGAAGAGGATTCTGAGATATATTAAAGGAACCTCAAATGCTGCATTATGTTTTGGAGGATCAGAATTAACTGTCAGAAGCTATGTTGATTCAGATTTTGCAGGAGATCTCGACAAAAGAAAATCCACTACTGGCTATGTGTTTACTCTTGCAGGAGGTGCTGTAAGCTGGGTTTCAAAACTGTAAACTGTTGTGGCATTATCAATAACAGAAGCAGAATACATGGCAGCCACGCAAGCTTGCAAAGAAGCAATTTGGATTCAAAGGTTATTGGAGGAGCTTGGGCACAAACAAGAGATGATTACATTGTTTTGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene420 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20169	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	83%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	46%
Blast2go	gag-pol polyprotein	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 17 aas, your sequence is shorter than subject: 144 - 542

Fln protein: LQKASNGGKI*DRESNLEKRELLANY*RETLENVKRILRYIKGTSNAALCFGGSELTVRSYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWVSKL*TVVALSITEAEYMAATQACKEAIWIQRLLEELGHKQEMITLFCDSQGHD

Protein Length: 145

Fln nts: CTTTGCAAAAGGCAAGTAATGGCGGCAAAATTTGAGATCGAGAAAGCAATCTTGAGAAAAGAGAATTGCTTGCCAATTATTGAAGAGAGACATTGGAAAATGTGAAGAGGATTCTGAGATATATTAAAGGAACCTCAAATGCTGCATTATGTTTTGGAGGATCAGAATTAACTGTCAGAAGCTATGTTGATTCAGATTTTGCAGGAGATCTCGACAAAAGAAAATCCACTACTGGCTATGTGTTTACTCTTGCAGGAGGTGCTGTAAGCTGGGTTTCAAAACTGTAAACTGTTGTGGCATTATCAATAACAGAAGCAGAATACATGGCAGCCACGCAAGCTTGCAAAGAAGCAATTTGGATTCAAAGGTTATTGGAGGAGCTTGGGCACAAACAAGAGATGATTACATTGTTTTGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig420___RETLENVKRILRYIKGTSNAALCFGGSE-----LTVRSYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWVSKL*TVVALSITEAEYMAATQACKEAIWIQRLLEELGHKQEMITLFCDSQ
Q9M5J7______________KEHWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQVVRLDCEIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain