SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene349

Length: 1020 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene349

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10017	30/32

Source	Descriptions	Term	Type	Identity
AutoFact	Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial n=4 Tax=Brassicaceae RepID=IDH1_ARATH	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	isocitrate dehydrogenase	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isocitrate dehydrogenase (NAD(+)).	EC:1.1.1.41	-	0.0	94%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	94%
Blast2go	Biosynthesis of terpenoids and steroids	01062	94%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	94%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	94%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	94%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	94%
Blast2go	Biosynthesis of plant hormones	01070	94%
Blast2go	Metabolic pathways	01100	94%
Blast2go	Biosynthesis of secondary metabolites	01110	94%

Source	GOs	Term	Type	Identity
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	94%
Blast2go	isocitrate metabolic process	GO:0006102	Biological Process	94%
Blast2go	NAD binding	GO:0051287	Molecular Function	94%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	94%
Blast2go	isocitrate dehydrogenase (NAD+) activity	GO:0004449	Molecular Function	94%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isocitrate dehydrogenase NAD-dependent	IPR004434	-	0.0	-
Sma3	Isocitrate/isopropylmalate dehydrogenase	IPR001804	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
233	25			75	0.996473
364			33	66	0.997452
366			33	66	0.997452
368	66	33			0.997452
376	66			33	0.997452
381		33		33	0.997753
382	33			66	0.997452
415		12	87		0.992554
416			87	12	0.992554
417	75	12		12	0.975346
418			25	75	1.0
420			25	75	1.0
421	25	75			1.0
424	75			25	1.0
427			25	75	1.0
432	12	12		75	0.975346
433		12		87	0.992554
434		12		87	0.992554
436		12	87		0.992554
477		11		88	0.923564
478	88		11		0.923564
480		11		88	0.923564
481			11	88	0.923564
485	88	11			0.923564
489	88		11		0.923564
490		11	88		0.923564
496		11	88		0.923564
599			8	91	0.999766
600	4	4	83	8	0.998844
602	77		9	9	0.999071
603	77		4	18	1.0
604	81	4	13		1.0
608		85	9		0.999726
609		80	4	14	1.0
610	4	85		9	0.999726
611	85		9	4	0.999726
612			10	90	0.999898
613		20		80	1.0
614	10			90	0.999898
615		5	10	85	0.999793
620	90	10			0.999898
621	10			89	0.999919
849		77		22	0.999999
962	75			25	0.996473
963		25		75	0.996473
965		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain