SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene340

Length: 1076 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene340

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1421	26/38
SustainPine v2.0	sp_v2.0_unigene62620	9/38
SustainPine v2.0	sp_v2.0_unigene78246	2/38

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 38 [Arabidopsis thaliana] sp\|Q93ZG7.2\|RH38_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 38; AltName: Full=Low expression of osmotically-responsive genes 4 protein; AltName: Full=Protein CRYOPHYTE emb\|CAB64214	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	dead-box atp-dependent rna helicase 38-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	78%
Blast2go	response to heat	GO:0009408	Biological Process	78%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	78%
Blast2go	poly(A)+ mRNA export from nucleus	GO:0016973	Biological Process	78%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	78%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	78%
Blast2go	RNA-dependent ATPase activity	GO:0008186	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	RNA helicase activity	GO:0003724	Molecular Function	78%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	78%
Blast2go	cytoplasm	GO:0005737	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNL9

Fln msg: Overlapping hits, possible frame ERROR between 663 and 563, your sequence is shorter than subject: 247 - 507

Fln protein: MLAQDGFQDDSLRIIKDIQKNRDDCQILLFSATYDENVKQFTTRVISKANQVFVKKEELSLDVIKQYVVKCPDELAKVEVLKDKIFPLAEKLGQSIIFVRTRENASMLHSKLEAEGYKCTSIQGGLKLDDRDRVIKEFRTGLTKILISTDVLARGFDQAQVTLVVNFDLPIKHSHPFDPDYEVYLHRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRQVPEVPWNSEDAFEAVLKDAGLA*

Protein Length: 248

Fln nts: ATGTTGGCTCAGGATGGGTTTCAAGATGATTCCCTGAGAATTATAAAGGACATTCAGAAAAATCGAGATGATTGTCAGATTCTCCTCTTTTCAGCAACCTACGATGAGAATGTCAAGCAGTTCACAACTAGGGTAATTTCAAAAGCAAATCAGGTGTTTGTGAAAAAGGAAGAGTTATCTTTAGATGTAATCAAACAGTATGTAGTGAAATGTCCAGATGAACTTGCTAAAGTAGAGGTTTTAAAGGACAAAATTTTCCCACTGGCTGAAAAACTTGGGCAGTCAATAATCTTTGTCCGCACCAGAGAGAATGCAAGTATGTTGCATAGCAAGTTAGAAGCAGAGGGTTACAAGTGCACTTCTATTCAAGGTGGACTTAAGCTGGATGACAGGGATCGTGTAATTAAGGAATTCAGAACAGGACTGACAAAGATTCTTATATCAACTGATGTGCTTGCACGGGGTTTTGATCAAGCACAGGTAACCCTGGTTGTGAATTTTGATCTCCCTATTAAACATTCTCATCCATTTGACCCTGATTATGAAGTATACTTGCATCGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGACAGGTACCTGAGGTACCTTGGAATAGTGAAGATGCTTTTGAAGCTGTCTTGAAAGATGCAGGGCTTGCATAAGTAGCACACCTTCTTTGAGTCTTCAGATTAAACTTTGTTCATACTGTAATTCAGCTTGTCTGCAAACAAACTTTGGCAATTTAAAAAAAATGATTTGCAATTGCGTTTGCAAATAAAATTCCAGTCATGTTTGCTTGGGTTTGGTACTGGGGACCATATAATTGTGTTTAATCTGTTTCAGTTCTTGAGGCAATATTTAGCCATGTAAATGCATGAGAGGTATGATTGATGCCATCCATGCCTATCATGCAAGTAAGACATTTCTCTTTTGATAAGAATTTTCTCATTATTTCTGGTTTCATATTGGATTGAAAACCATTCTACTCTGCTTTTGAGT

Fln Alignment:

Contig340___MLAQDGFQDDSLRIIKDIQKNRDDCQILLFSATYDENVKQFTTRVISKANQVFVKKEELSLDVIKQYVVKCPDELAKVEVLKDKIFPLAEKLGQSIIFVRTRENASMLHSKLEAEGYKCTSIQGGLKLDDRDRVIKEFRTGLTKILISTDVLARGFDQAQVTLVVNFDLPIKHSHPFDPDYEVYLHRHWSKWAFxxxxxxxxxxxxxxxxxxxxxxxxxxxKIERYFQRQVPEVPWNSEDAFEAVLKD
B8LNL9______________MLAQDGFQDDSLRIIRDIQKNRDDCQILLFSATYDENVKQFTTRVISKANQVFVKKEDLSLDVIKQYLVKCPDELAKVEVLKDRIFPLAEKLGQSIIFVRTRENASMLHSKLEAEGYKCTSIQGGLKLEDRDRVIKEFRTGLTKILISTDVLARGFDQAQVTLVVNFDLPVKHASP-DPDYEVYLHRIGRSGRFxxxxxxxxxxxxxxxxxxxxxxxxxxxKIERYFERQVPEVPWDSEDAFEAVLKD

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
185	75	25			0.996473
187	75			25	0.996473
188		25		75	0.996473
191	75		25		0.996473
193		25		75	0.996473
196	75			25	0.996473
197	75		25		0.996473
198	75		25		0.996473
200	75			25	0.996473
203	75	25			0.996473
204	25			75	0.996473
205		25	75		0.996473
207	75	25			0.996473
208	25		75		0.996473
550		20		80	0.995493
552	80			20	0.995493
553	80	20			0.995493
556	80		20		0.995493
557	20			80	0.995493
558	80	20			0.995493
560			25	75	1.0
563		80	20		0.999996
564	40	20	40		1.0
566		60	10		1.0
567			90	10	0.90298
568	60	10		30	1.0
569		30	20		1.0
570	80	20			0.999996
573		10		90	0.90298
574		10		90	0.90298
576	10		90		0.90298
577		40	10		1.0
579		60	40		1.0
580			60	40	1.0
581	60	40			1.0
583		40	60		1.0
585	10	10	60		0.999999
586	10	20	70		0.999998
587	20		80		0.999996
591		25		75	1.0
592			25	75	1.0
596	25			75	1.0
600	75			25	1.0
601	75			25	1.0
604		25	75		1.0
605	75			25	1.0
610		25	75		1.0
611			75	25	1.0
613	12			87	0.999964
868	70	30			1.0
1010	90	10			0.90298
1011		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain