SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene265

Length: 1028 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene265

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11537	13/14

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin-protein ligase CHIP [Arabidopsis thaliana] sp\|Q9SRS9.1\|CHIP_ARATH RecName: Full=E3 ubiquitin-protein ligase CHIP; AltName: Full=Carboxyl terminus of HSC70-interacting protein; Short=AtCHIP; AltName: Full=Plant U-box protein 61; AltName: Full=	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	e3 ubiquitin-protein ligase chip	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	73%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	73%
Blast2go	response to salt stress	GO:0009651	Biological Process	73%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	73%
Blast2go	chaperone binding	GO:0051087	Molecular Function	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
78		33	66		0.997452
79	33			66	0.997452
423		40		60	1.0
424	60		40		1.0
426		40		60	1.0
427	60		40		1.0
431		40		60	1.0
432		40	60		1.0
436			40	60	1.0
437	60	40			1.0
438	60			40	1.0
439	60		40		1.0
441		40		60	1.0
445	60	40			1.0
446	40			60	1.0
461	90			10	0.90298
467	90	10			0.90298
469			90	10	0.90298
472		10		90	0.90298
474		90	10		0.90298
475	90			10	0.90298
477	10	90			0.90298
478	90	10			0.90298
481	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain