SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene211

Length: 1199 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene211

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3342	11/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF584 domain containing protein	-	-	6.0e-37	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	uncharacterized protein	-	-	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Senescence regulator	IPR007608	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKT6

Fln msg:

Fln protein: MERSNSYIGRASFYSLSSSISTQMENPMEEFEEEEIWAVVPSEPNTKDPRFKSQEIKKVREIASTSRRLPTASRMIPRSLANEDSVNNVSRIRHQSAPVNIPDWSRVQRRESQRRITPIEDEFSIDEDDGEEEDKEDERIPPHELIARQLARSQITSFSVFEGAGRTLKGRDLSRVRNAVLTRTGFLAIGLLTLHH*

Protein Length: 198

Fln nts: TTTTAACTGTACTGTATTTTGAGCTTCGCGACACATTATCCACATTATAGGTAAATGTGCTGTTATGAGATTTGAACTCAAATTCTGTATCGAGCAACC_-_ATGGAACGCAGCAATTCTTATATAGGTAGGGCTAGTTTTTACAGTTTGTCATCTTCTATCAGTACCCAAATGGAGAATCCCATGGAGGAATTCGAGGAGGAGGAAATCTGGGCTGTTGTTCCCTCTGAGCCCAATACCAAAGATCCGAGGTTCAAATCGCAAGAGATCAAGAAGGTCAGAGAAATCGCCTCTACTTCTCGGCGGCTTCCCACGGCCTCGCGCATGATTCCTCGGAGCCTTGCGAATGAAGATAGCGTCAATAATGTTTCACGCATCAGGCATCAATCCGCACCTGTGAATATACCTGATTGGTCGAGAGTTCAAAGAAGGGAAAGTCAGAGGAGGATTACGCCAATTGAGGATGAATTTAGTATTGATGAAGATGATGGGGAAGAAGAGGATAAGGAGGACGAGAGGATCCCACCGCATGAATTGATTGCTCGGCAGCTCGCCAGAAGCCAAATTACATCGTTCTCTGTATTTGAAGGCGCGGGGAGGACTCTGAAGGGCAGAGATCTCAGTAGGGTTCGAAATGCGGTCTTAACACGAACTGGGTTCCTGGCAATAGGTCTTCTAACTCTTCACCACTAG___TACCATTTTTCTTTTTGTGGGGGTGCAGGGTAATGGGTTCCTGATGTTAATGTTTCGGAATAATTATATCGGTAGAAATTAAGTGGGTAGGGATGGATTCTTTTTCATCATCACGGATCGTCTCTAAATCACCACATAGGGGTCTGTGAAACAACATGCCTTTGGGGTGTTGGAAGATATGGTCAAGGGCATGCTGGATTTTGGAAGGTCTCTTGCGGTTATGTCTGAGTTTTCTGGTTGGGTACCCTTTTTTGTTCATTCATATAGCCTGATTTTGCTTGGGTTAATATAATGGAATATCAGAAGCGGTAGATTTTATAATGAGTGCAGTTGGCGCCCTGCTGCTACTTGCAGAGGTGAATGAATGATATAGTTCAGTATTGACAGCGGACCTTATCTCATGTGCGTTGGAGATGTTCGGTCATTCTTTGTTGTTAAAAGTGCCTACCACACTTTGGTTTTGGTTGGAGGGGTTTCATCCATGCTGTTGTAAGGAGGCAAGCAAGGTC

Fln Alignment:

Contig211___MERSNSYIGRASFYSLSSSISTQMENPMXXXXXXXIWAVVPSEPNTKDPRFKSQEIKKVREIASTSRRLPTASRMIPRSLANEDSVNNVSRIRHQSAPVNIPDWSRVQRRESQRRITPIXXXXXXXXXXXXXXXXXXXRIPPHELIARQLARSQITSFSVFEGAGRTLKGRDLSRVRNAVLTRTGFL
A9NKT6______________MERRNSYMGRASFYSLSSSINTQIENPAEEFEEEEIWAVVPSEPNTRDPRFKSQEIKKVREIASTSRRLPTASRMIPRNLANEENANNVSRIRHQSAPMNIPDWSRVQRRENQRRITVIEDDFGINEDDRVEEDEEDERIPPHELIARQLARSQITSFSVFEGAGRTLKGRDLSRVRNAVLTRTGFL

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
113	66	33			0.997452
114			33	66	0.997452
119			33	66	0.997452
121		33		66	0.997452
122	66	33			0.997452
124	66			33	0.997452
129	50	25	25		0.995533
130			75	25	0.996473
131		25	50	25	0.995533
132	25	25	50		0.995533
133		75	25		0.996473
135		25	25		0.995533
137		25	50	25	0.995533
139		25		75	0.996473
142			25	75	0.996473
143	75		25		0.996473
145	80			20	0.995493
148		20		80	0.995493
149	20			80	0.995493
150		20	80		0.995493
516	75			25	0.996473
517			75	25	0.996473
518	66			33	0.997452
519		33	66		0.997452
521	66	33			0.997452
659	57			28	1.0
660	57	28		14	1.0
661		71	28		1.0
665		28	57	14	1.0
666		28	71		1.0
667	14			85	0.993533
668		14		85	0.993533
670		71	28		1.0
671		85		14	0.993533
674			71	28	1.0
676	85			14	0.993533
677	57	28	14		1.0
679	71	14			0.984337
680	14	14	71		0.984337
681	14	14	71		0.984337
693			11	88	0.923564
695		88	11		0.923564
702	88			11	0.923564
705	88		11		0.923564
707		88		11	0.923564
708	88		11		0.923564
710		11		88	0.923564
711	11			88	0.923564
712		11		88	0.923564
715	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain