SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene190

Length: 853 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene190

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2498	1/5
SustainPine v2.0	sp_v2.0_unigene7571	4/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: queuine tRNA-ribosyltransferase domain containing 1 [Rattus norvegicus] ref\|XP_221768.3\| PREDICTED: queuine tRNA-ribosyltransferase domain containing 1 [Rattus norvegicus] gb\|EDM11174.1\| rCG52743, isoform CRA_a [Rattus norvegicus] gb\|EDM11176.1	-	-	9.0e-26	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	queuine trna-ribosyltransferase subunit qtrtd1	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	tRNA-guanine transglycosylase.	EC:2.4.2.29	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	queuosine biosynthetic process	GO:0008616	Biological Process	0.0	66%
Blast2go	queuine tRNA-ribosyltransferase activity	GO:0008479	Molecular Function	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRC2

Fln msg: Overlapping hits, possible frame ERROR between 659 and 647, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 111 aas, your sequence is shorter than subject: 284 - 418

Fln protein: *PWLSLIVVKAWSNNGSRARRGTLNMGGVEVDTPCLLLATRKGLPHFITPDLLHSLHPTARAMQISPLHFWDCPSPSTVETIGGVHGMLSMPEYGFIAIPRDSVLCIPNPGGSNKFGASFETPFGNRMAKPVQYMETICALKPNLWSTLPDEVPSWASDKRNRISVDRTTRWLDECLAMHPTGSESALGAVVGGTSIEQREHSASEVASRNVAGxxxxxxGLGESIDDRPALLDAIMRILPEDKPRHISGLGLPVEVLQGVAAGIDLFDSTYPYLLTMGGYAMT

Protein Length: 285

Fln nts: CGTGACCTTGGCTGTCACTCATTGTAGTGAAAGCATGGAGTAATAATGGGTCAAGGGCAAGAAGGGGCACACTTAACATGGGCGGGGTGGAAGTGGATACTCCGTGCTTGTTATTGGCAACCAGGAAAGGCCTCCCTCATTTCATCACACCCGACCTTCTTCATTCACTCCATCCAACTGCGCGAGCCATGCAAATCAGTCCCTTGCACTTCTGGGATTGTCCTTCGCCCAGTACTGTGGAAACCATTGGAGGAGTTCATGGAATGTTGAGCATGCCTGAGTATGGATTTATAGCAATTCCAAGGGATTCAGTTTTGTGCATACCAAATCCTGGAGGCAGCAATAAATTTGGAGCTTCATTTGAGACCCCATTTGGAAATAGGATGGCAAAACCTGTACAATATATGGAAACTATATGCGCTTTAAAGCCAAACTTGTGGTCTACCCTACCTGACGAGGTGCCTTCATGGGCATCTGACAAGAGGAACAGAATTTCGGTGGACAGAACGACACGCTGGCTTGATGAATGCCTTGCTATGCACCCTACAGGTTCAGAGTCTGCTCTTGGAGCTGTTGTGGGTGGGACTAGTATAGAACAGCGTGAACATTCAGCTAGTGAAGTGGCAAGCCGTAATGTTGCAGGGxxxxxxxxxxxxxxxxxxGGATTAGGAGAAAGCATTGATGACCGCCCTGCTCTATTAGATGCAATAATGAGAATCTTACCAGAGGATAAGCCACGACACATTAGTGGACTTGGTCTACCAGTGGAAGTACTGCAAGGAGTGGCAGCTGGGATAGATCTATTTGATAGCACGTATCCTTATCTTCTAACAATGGGAGGTTATGCTATGACA

Fln Alignment:

Contig190___VVKAWSNNGSRARRGTLNMGGVEVDTPCLLLATRKGLPHFITPDLLHSLHPTARAMQISPLHFWDCPSPSTVETIGGVHGMLSMPEYGFIAIPRDSVLCIPNPGGSNKFGASFETPFGNRMAKPVQYMETICALKPNLWSTLPDEVPSWASDKRNRISVDRTTRWLDECLAMHPTGSES-ALGAVVGGTSIEQREHSASEVASRNVAGFxxxxFGLGESIDDRPALLDAIMRILPEDKPRHISGLGLPVEVLQGVAAGIDLFDSTYPYLLTMGGYAMT
C0PRC2______________VVKACSNNGSRARRGTLYMGGVEVDTPCLLLATRKGLPHFITPDLLHSLHPNARAMEISPLHFWECPSPSTVTAIGGVHGMLSMPEYGFIAIPRDSVMCIPNAEGSNKFGASFETPYGHRMVKPVQYMENICALKPNLWSSLPDEVPSWVSDKRNIISVDRTTRWLDDCLSMQPTGSESAALGAVVGGTSLELRERSASEVASRNVAGFxxxxFGLGESIEDRPVLLDAIMRNLPEDKPRHISGLGLPVEVLQGVAAGIDLFDSTYPYLLTMGGYAMT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain