SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene169

Length: 384 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene169
AGTCTGCTTCATCTTCATTGAGTTGCCAATAGTTACAACAACATTTTCTAGTTGCAGGAAACAAAATGAACTATAGAGTATATAGCAATTAAGAAACTGAAATTAGCATTTGACATTTTCTCAATGTTGCAAAGTTTTCCTGCCCTTGAACAACAAATACATATTTAATTTATATGCAAGCAAAGCAGACAGGTTCATTTTAACACCGCAAATAGCGCTCCTTTAGCCATAATGTGTACAAGCTTTCTCCTACGAGCAACTCCGCAACCCAACAGCTTCTGGAAATAAAGAAAAACCTCTGCCCCTTCACAGCAAGGCCCTCATCGGAGGCCTCTCGGGCATTATCAGTCAGTTACGGAAAAGTGAGTGACAGCCAAGGTCACG

Ace file of the UniGene uagpf_v2_unigene169 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21683	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	unknown [Picea sitchensis]	-	-	2.25819e-08	80%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2P8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 160 aas, atg_distance in limit (1-15): atg_distance = 14, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 46 - 301

Fln protein: CVQAFSYEQLRNPTASGNKEKPLPLHSKALIGGLSGIISQLRKSE*

Protein Length: 47

Fln nts: AGTCTGCTTCATCTTCATTGAGTTGCCAATAGTTACAACAACATTTTCTAGTTGCAGGAAACAAAATGAACTATAGAGTATATAGCAATTAAGAAACTGAAATTAGCATTTGACATTTTCTCAATGTTGCAAAGTTTTCCTGCCCTTGAACAACAAATACATATTTAATTTATATGCAAGCAAAGCAGACAGGTTCATTTTAACACCGCAAATAGCGCTCCTTTAGCCATA_-_ATGTGTACAAGCTTTCTCCTACGAGCAACTCCGCAACCCAACAGCTTCTGGAAATAAAGAAAAACCTCTGCCCCTTCACAGCAAGGCCCTCATCGGAGGCCTCTCGGGCATTATCAGTCAGTTACGGAAAAGTGAGTGACAGCCAAGGTCACG

Fln Alignment:

Contig169___VQAFSYEQLRNPTASGNKEKPLPLHSKALIGGLSGIISQL
A9P2P8______________IRIFSYEQLRDTAASGHQENPLSLLSKALIGGLSGIIGQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain