SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene109

Length: 991 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene109

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9753	36/38
SustainPine v2.0	sp_v2.0_unigene79189	2/38

Source	Descriptions	Term	Type	Identity
AutoFact	Phenazine biosynthesis protein, putative n=1 Tax=Ricinus communis RepID=B9S449_RICCO	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	phenazine biosynthesis protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	0.0	61%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phenazine biosynthesis PhzC/PhzF protein	IPR003719	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVN9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 202 - 484

Fln protein: *PWLSLSFKGKKIRGYGEPSPEGVENCKLLPGTGVVELDFPLVTASKCQSAEVEKLSDVLGNVQIVWAGLNSLGDYLVEVPSANDVKQLKPDFGKMLDFEGRGGLIVTSVADPDTEFDFISRFFCPKAGIPEDPVTGSAHCTLGPYWADKLQKDTLEAYQASERGGRISVIVDKVGGRVNLQASAVLVMVGTLLNSHIVSS*

Protein Length: 203

Fln nts: GTGACCTTGGCTGTCACTCAGTTTTAAAGGCAAAAAAATCAGAGGATATGGTGAGCCATCTCCAGAAGGGGTGGAAAACTGTAAACTTTTACCTGGAACTGGCGTTGTTGAACTTGACTTTCCATTGGTCACAGCTTCTAAATGCCAGTCTGCTGAAGTTGAAAAATTGTCAGATGTACTAGGAAATGTTCAAATTGTTTGGGCAGGACTAAACAGCTTGGGTGATTACTTGGTCGAGGTTCCAAGTGCCAATGATGTGAAACAATTGAAACCAGACTTTGGGAAGATGTTAGATTTTGAAGGGCGGGGAGGTCTCATTGTAACATCAGTTGCAGATCCGGATACTGAATTTGATTTCATTTCGAGATTCTTTTGTCCAAAAGCAGGCATCCCCGAGGACCCAGTTACAGGCAGTGCTCATTGTACATTAGGTCCTTACTGGGCTGACAAACTTCAAAAGGACACCTTGGAAGCTTATCAAGCTTCAGAACGTGGAGGTAGAATTAGTGTGATAGTTGATAAAGTTGGAGGGCGTGTAAATTTACAGGCTAGTGCAGTGCTTGTCATGGTGGGAACACTCCTGAATAGCCACATAGTTTCTTCCTGA___CCTGGACAGTTTTACATACTTCCATCTGGAGCATGTTTTTATTGATCTTGACTACAAAACTTGTATTGTTGAACTGTGACCTTGGCTATGCAACTATGTTGTTGATTATTCTCTTTCTTATGTTGATAATAAAGTAAAACTGGATCCTCGAGTGGACTTCACCTTGACATCAATTTATTCTAGATTTTTTAATGCGAAGCTAGATGGAATGTTTTGTGTTCATTAAATCAGTACCATTTCCGATGAAAATTATCAGTAATTTTATGGTAAATACAGTTGGAAGTTGATTAATGGATTACAAAAATCCTTTTTATCGAATTGTATGGGTAACCTTGATCAGCTCAATGCCCAAAATACTGTATGGTTAAAGTGCAAATTGAACCA

Fln Alignment:

Contig109___KGKKIRGYGEPSPEGVENCKLLPGTGVVELDFPLVTASKCQSAEVEKLSDVLGNVQIVWAGLNSLGDYLVEVPSANDVKQLKPDFGKMLDFEGRGGLIVTSVADPDTEFDFISRFFCPKAGIPEDPVTGSAHCTLGPYWADKLQKDTLEAYQASERGGRISVIVDKVGGRVNLQASAVLVMVGTLLNSHIVSS
A9NVN9______________KAKKIGGYDDPPPKGVENCKQRSGTGVVELDFPLVPASKCESAEVEKLSDVLGNVQIVWAGLNSLGDYLVEVPSTNDVKQLKPDFEKMLEFEGRGGLIVTSVADPDSEFDFISRFFCPKAGIPEDPVTGSAHCTLGPYWADKLQKDTLEAYQASERGGRVSVIVDKVGGRVNLQGSAVLVMVGTLLNSHIVSS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
91	85		14		0.993533
92		85	14		0.993533
96			85	14	0.993533
97	85	14			0.993533
304		16	83		0.994512
312			83	16	0.994512
315			16	83	0.994512
392		90	10		0.90298
393		90	10		0.90298
395			90	10	0.90298
396	90		10		0.90298
397			90	10	0.90298
398		10	90		0.90298
401		83		16	0.999991
406			16	83	0.999991
409	83			16	0.999991
413	83			16	0.999991
416	16		83		0.999991
534	38		61		1.0
868	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain